Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g02108 ATGGATGCCAGTATTGATGATAAGAGTGAAAGTAGACTCTATATTGGTAACCTTGATCTTAGAATTACAGAAGCTGCTTTGCTCAAAATGTTTTCTCCTTATGGAAAGATAATTTCTGAGGACTTCTTATGGCACACACGTGGCCCGAAACGTGGGGAGCCACGTGGCTTTGCTTTCATCCAGTATAGCACAAAAGAGGAAGCAGAATTAGCCAAGGAGAAAATGCACGGGAGGTTCGCCTGCGGCCGGCCGCTGGTTGTTCGTCTTGCCGGTGAGAAGTGTTTGCTGGAAACAGCTGATAAGTCTACAAAGGCAGCAAGTGAAGGGCACAAGATGCTTCTCATTGGTGGTGGTGGTGGTGGTGGTGCCATGGGACAGACAAGTCGCACTGCAAAGATAGCTGCTATAAAAAATAAACTGAAATCCTTAGAGGAGGAGAGTTCTAGGACCAAGAAGCAGAAGCAAAGTGAGAATATTTGTTGA 483 0.4576 MDASIDDKSESRLYIGNLDLRITEAALLKMFSPYGKIISEDFLWHTRGPKRGEPRGFAFIQYSTKEEAELAKEKMHGRFACGRPLVVRLAGEKCLLETADKSTKAASEGHKMLLIGGGGGGGAMGQTSRTAKIAAIKNKLKSLEEESSRTKKQKQSENIC 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g02108 160 CDD RRM_RBM18 12 90 IPR039157 -
Viun4g02108 160 Coils Coil 133 153 - -
Viun4g02108 160 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 13 85 IPR000504 GO:0003723
Viun4g02108 160 SUPERFAMILY RNA-binding domain, RBD 5 94 IPR035979 GO:0003676
Viun4g02108 160 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 7 94 - -
Viun4g02108 160 Gene3D - 2 158 IPR012677 -
Viun4g02108 160 SMART rrm1_1 12 88 IPR000504 GO:0003723
Viun4g02108 160 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 11 92 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g02108 Viun-Chr4 36586910 36589081 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun4g02108 11 93 Eukaryotic Initiation Factors Gene Family AT1G71770 39.759 3.40e-11 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g02108 K24527 - gmx:100806572 270.781