Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g02106 ATGTTTTCTCCTTATGGAAAGATAATTTCTGAGGACTTCTTATGGCACACACGTGGCCCGAAACGTGGGGAGCCACGTGGCTTTGCTTTCATCCAGTATAGCACAAAAGAGGAAGCAGAATTAGCCAAGGAGAAAATGCACGGGAGGTTCGCCTGCGGCCGGCCGCTGGTTGTTCGTCTTGCCGGTGAGAAGTGTTTGCTGGAAACAGCTGATAAGTCTACAAAGGCAGCAAGTGAAGGGCACAAGATGCTTCTCATTGGTGGTGGTGGTGGTGGTGGTGCCATGGGACAGACAAGTCGCACTGCAAAGATAGCTGCTATAAAAAATAAACTGAAATCCTTAGAGGAGGAGAGTTCTAGGACCAAGAAGCAGAAGCAAAGTGAGAATATTTGTTGA 396 0.4798 MFSPYGKIISEDFLWHTRGPKRGEPRGFAFIQYSTKEEAELAKEKMHGRFACGRPLVVRLAGEKCLLETADKSTKAASEGHKMLLIGGGGGGGAMGQTSRTAKIAAIKNKLKSLEEESSRTKKQKQSENIC 131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g02106 131 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1 56 IPR000504 GO:0003723
Viun4g02106 131 Coils Coil 104 124 - -
Viun4g02106 131 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 1 63 IPR000504 GO:0003723
Viun4g02106 131 SUPERFAMILY RNA-binding domain, RBD 1 65 IPR035979 GO:0003676
Viun4g02106 131 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 1 65 - -
Viun4g02106 131 Gene3D - 1 74 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g02106 Viun-Chr4 36586693 36589081 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun4g02106 1 64 Eukaryotic Initiation Factors Gene Family AT1G71770 40.625 2.53e-07 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g02106 K24527 - gmx:100806572 228.794