LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Viun4g02103	ATGGAGACTCAAAAACTAATTATACATCTCATTCTTCTCCTTTGCATACCTTGTTCATCCTCTTTCAGTCCCATAGATAACTACCTTCTTAGCTGTGGATCACAGAACAATGCTTCTCTCTTCAACCGCATCTTCGTTGGTGATTCCACAAACCAAGGCTCAAGTTTTCTCTCTGCTGACAAATCCATTTCCCTCACCAACCAAAACCCTCCCCCAGATTTGCCCATTTTGTATCACACTGCAAGAGTTTTCCCCAGCACAGGAAGCTTCGGGTTCAACATGATAAAGCATGGAACCCACTTGGTTCGTTTTCATTTCTCACCTTTTAAGGCTCAAGGGTTTGATCTAAAATCTGCTAACTTCAGTGTCTTGGTTGATGGTAATTTGGTGCTTAGAAATTTCAAGCCAAGTAATGGTGTGCTGCTTAAGGAGTTTATTCTGAAGATAGAGTCAAATTTGCTTGAAATTGTGTTTAGACCTGAAGGTAATTCAGGTTTTGCCTTTGTCAATGCTATGGAGGTGTTTACTGCTCCTGTTGATTTTGTTATAGATTATGGAGCTAGGTTAGTGGGTCCTTTTGGTGTGGTAGAGTACAAGAACCTTTCATCTCAGGTTTTGGAAACTGTCCATAGGATTAATGTTGGGGGTGTGAAAGTAACTCCTTTTAATGACACCCTTTGGAGGACATGGATTCCTGACGAGGAATTTCTGGTTTTTAAGGATGCTGCTAAGCCTGTGGGGAGTACTCAAACACCAAATTACCAGAAAGGAGGCGCCACTCGGGAGATCGCCCCAGATAGTGTTTACATGACTGCACAGGAAATGGATAAGGATCACGCCATTATAGGTTCACAGTTCAACATAACCTGGGATTTTCCAGTGGCACCTGGTGGTGTTCGACACTTGGTTCGGTTGCATTTCTGTGATATTGTTAGTCCTGTTCTTAATTTGCTATATTTTGACGTGTATATCAACGGGTATTCTGCATGCAAGGATCTGGATTTGTCATCCCTTACATTTCATGTGCTTGCATCTCCGGTGTATATGGATTTTGTTGCAGATTCTGATGACTCAGGTGTTATTCGAATAAGTGTTGGCCCTTCTGAACTGAGTGGTTCTAGGGGGATGAATGCCATTTTGAATGGGGCAGAGATAATGCAGCTGGTGAATGTTGAGGACTCACGTGTTGTTCCTGGGAGGAAAAGGTTGTGGATATTGGTGGGTTCAATTGCAGGTGGTGTTGTTGTTTTGCTTTTTGTTATGTCTGCATTTGTGCTTGCTCTCAAATGCAGGAAGAAGAAGAAGAAAAAGAAACCAAAACAAAGGACACTGGAAAGTGTAGGATGGACTCCTTTACGTGTGTTTGGAGGGAGTTCACTGAGTAGAATGTCTGAAGGAACAGCTTTTCCCTCTCCTGGTTCTTATGGTTATTTTGGGTTGAGAATCCCTTTTGCTGATATACAATTAGCCACAAATAACTTTGATAGGAGTCTGATTATAGGATCTGGTGGGTTTGGTATGGTTTACAAAGGAGTGCTCAAAGACAATGTGAAGGTTGCTGTCAAGAGAGGCATGCCAGGATCAAGACAAGGCCTTCCTGAATTCCAGACTGAAATAACAATCTTATCAAAAATTCGCCATCGCCATCTTGTTTCACTGGTTGGATATTGTGAAGAAAACTCAGAGATGATACTAGTCTATGAGTATGTTGAAAAGGGTCCACTCAAAAAACATCTATATGGTTCAGCAGTACATACACCTTTGTCTTGGAAGCAGAGACTTGAGATATGCATTGGTGCAGCTAGAGGTCTGCACTATCTACACACAGGTTTTGCGCAAGGAATCATACACCGTGACATCAAATCAACCAATATTTTGCTGGATGAGAACTATGTTGCCAAGGTTGCTGATTTTGGTCTTTCAAGATCAGGACCTTGCCTCAATGAAACCCATGTTAGTACTGGTGTGAAAGGAAGTTTTGGTTATCTTGATCCTGAGTATTTCCGAAGACAGCAGCTTACGGATAAGTCAGATGTTTACTCATTTGGGGTTGTGCTTTTTGAGGTTCTTTGTGCCAGACCTGCTGTTGATCCACAACTTGATAGAGAACAGGTGAACTTAGCAGAATGGGCACTTGAATGGCAGAAAAAAGGCATGCTAGAACATATTATTGATCCTTTTCTTGTTGGGAAGATAAAACAAAGCTCGTTGAAGAAATTTGGTGAAACAGCAGAGAAATGTTTGGCTGAATATGGTGTTGATAGGCCAACTATGGGTGCTGTGTTGTGGAATTTGGAATATGCACTTCAGCTCCATGAAAGTGACCAAGAAGAGGAGCCATACGATGATAGCAGTGCTCAGGAAACAGTGAATGTGACAACTACAGTAACTCCTGGGAGTCCTTCTAGAAGAGAGGGAGATAATGATAATGGTTATTCAGACATTAGTGCTACTGAAGTTTTTTCTCAACTAATGAAGAGTGAAGGTAGATAG	2493	0.4172	METQKLIIHLILLLCIPCSSSFSPIDNYLLSCGSQNNASLFNRIFVGDSTNQGSSFLSADKSISLTNQNPPPDLPILYHTARVFPSTGSFGFNMIKHGTHLVRFHFSPFKAQGFDLKSANFSVLVDGNLVLRNFKPSNGVLLKEFILKIESNLLEIVFRPEGNSGFAFVNAMEVFTAPVDFVIDYGARLVGPFGVVEYKNLSSQVLETVHRINVGGVKVTPFNDTLWRTWIPDEEFLVFKDAAKPVGSTQTPNYQKGGATREIAPDSVYMTAQEMDKDHAIIGSQFNITWDFPVAPGGVRHLVRLHFCDIVSPVLNLLYFDVYINGYSACKDLDLSSLTFHVLASPVYMDFVADSDDSGVIRISVGPSELSGSRGMNAILNGAEIMQLVNVEDSRVVPGRKRLWILVGSIAGGVVVLLFVMSAFVLALKCRKKKKKKKPKQRTLESVGWTPLRVFGGSSLSRMSEGTAFPSPGSYGYFGLRIPFADIQLATNNFDRSLIIGSGGFGMVYKGVLKDNVKVAVKRGMPGSRQGLPEFQTEITILSKIRHRHLVSLVGYCEENSEMILVYEYVEKGPLKKHLYGSAVHTPLSWKQRLEICIGAARGLHYLHTGFAQGIIHRDIKSTNILLDENYVAKVADFGLSRSGPCLNETHVSTGVKGSFGYLDPEYFRRQQLTDKSDVYSFGVVLFEVLCARPAVDPQLDREQVNLAEWALEWQKKGMLEHIIDPFLVGKIKQSSLKKFGETAEKCLAEYGVDRPTMGAVLWNLEYALQLHESDQEEEPYDDSSAQETVNVTTTVTPGSPSRREGDNDNGYSDISATEVFSQLMKSEGR	830

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Viun4g02103	830	Gene3D	Transferase(Phosphotransferase) domain 1	570	794	-	-
	Viun4g02103	830	MobiDBLite	consensus disorder prediction	774	815	-	-
	Viun4g02103	830	MobiDBLite	consensus disorder prediction	785	815	-	-
	Viun4g02103	830	PANTHER	OS07G0166700 PROTEIN	481	772	IPR045272	GO:0004714\|GO:0006468
	Viun4g02103	830	Pfam	Protein tyrosine and serine/threonine kinase	499	694	IPR001245	GO:0004672\|GO:0006468
	Viun4g02103	830	Pfam	Malectin-like domain	30	387	IPR024788	-
	Viun4g02103	830	FunFam	Receptor-like protein kinase FERONIA	570	784	-	-
	Viun4g02103	830	SMART	serkin_6	494	768	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Viun4g02103	830	CDD	STKc_IRAK	500	766	-	-
	Viun4g02103	830	Gene3D	-	205	389	-	-
	Viun4g02103	830	Gene3D	-	27	180	-	-
	Viun4g02103	830	ProSiteProfiles	Protein kinase domain profile.	494	768	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Viun4g02103	830	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	615	627	IPR008271	GO:0004672\|GO:0006468
	Viun4g02103	830	Gene3D	Phosphorylase Kinase; domain 1	474	569	-	-
	Viun4g02103	830	FunFam	Putative receptor-like protein kinase	27	178	-	-
	Viun4g02103	830	ProSitePatterns	Protein kinases ATP-binding region signature.	500	522	IPR017441	GO:0005524
	Viun4g02103	830	SUPERFAMILY	Protein kinase-like (PK-like)	477	766	IPR011009	-
	Viun4g02103	830	FunFam	receptor-like protein kinase FERONIA	462	569	-	-
	Viun4g02103	830	FunFam	Receptor-like protein kinase FERONIA	205	390	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Viun4g02103	Viun-Chr4	36569387	36573647	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Viun4g02103	2	830	Receptor kinase-like Gene Family	AT3G46290	50.117	0.0	770

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_CrRLK1L-1	Viun4g02103		Malectin_like	5.6e-30	CL0202

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Viun4g02103	-		-	gmx:100814974	1454.5