Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g02075 ATGGAGCAGTCTCTGCTGAGAGGCGAAAGCAGTGGCCTCGGCTCCCGCCGGCGAGGACTGTTCCGGCGTTCCGACGCTATAACCCACGGTTCCAACTACGAGAAAGCCGCTGCGCTCATCGATCTGGCTGAAGATGGTGTGGGTCTCCCTGAACAAATTCTTGATTCATCAAACTTCCAAAATTATGCAAGATTTTATTTTGTATTCACTAAATTCAATCTCATATGGTCTCTTAGTTATTTTGCTTTGATAGTCCTGAATTTCCTGGAGAAACCTCTGTGGTGTAAAAAACTTGCCACACAGTCCTGCAACGACAGAGAGTATTTCTATTTGGGTCAATTACCGTATCTAACTGATGCAGAATGTCTTATTTATGAGGGAATAACTCTTCTTGTGATAATCATTCATACTTTCTTCCCATTGTCTTACGAAGGATCTCGTATATATTGGAAAAATGCTTTTAATCAATTCAAGGTTTTCTGTCTATTAGTTCTTGTTGCTGATACGCTGCTCTACGTCTTTTACTTGTCTCCACTGGCTTTTGATTTTCTACCTTTCAGAATTGCACCTTATGTCAGAGTTGTTCTTTTTGTTCTGAACATTAGGGAGCTACGAGAAACCATCACTATCTTGTTTGGGATGCTTGACACATACTTAAATGTTTTGGCATTGGGACTTCTGTTTCTTGTTTTTGCTAGTTGGGTGGCATATGTGTTTTTTGAGGATACAATACAGGGGAAAACAGTATTCACTTCATATGGTGCTACGTTGTATCAAATGTTTCTTTTATTTACCACATCCAATAATCCAGATGTTTGGGTTCCTGCATACAAGTCTTCTCGTTGGTACTGCCTCTTTTTTGTACTGTTTGTGCTGGTGGGGGTTTACTTTGTTACAAACCTTATCCTTGCCGTTGTCTATGATAGTTTCAAGAGTGAGCTTGTGAAACAAGTTTTTGAAAAGGATCTTCTGAGAAGAACTATGCTGGAGAAAGCTTTTAATCTCTTAGATACACTTAATATTGGAGCTCTCAACAAAAATCAATGCATCAGGCTCTTTGAGGAGCTGAACAAGTACAGGACTTTGCCAAAAATCTCCAGTGAAGAATTTGAGCTGATATTTGATGAGCTGGACGATAGTCACGATATAAAGATCAACAAGGATGAATTTGCTGATATTTGCAATGCAATTGCTTTAAAATTTCAGAAGGAAGATGTTATGTCTTACTTTGAGTATTTAGCATTCTACCACTGGCCCAGCTCAAAGAGATTAAAAGAATTTGTAAAGACTCCAATGTTTGGATACATAGTGTCCTTCATTCTAGTAGTAAATCTGGTTGCAGTTATTATCGAGACAACGCTTGATATAGAAAACAATTCTGGTCAAAAGCTGTGGCAAATAGTTGAGTTCGTTTTTGGGTGGATATATGTAGTAGAAATGCTTTTAAAGATTTATGCATACGGATTTGAGAACTATTGGCGGGATGGTCAAAATCGCTTTGATTTTATTATCACGGTGATAATTGTCATTGGAGAAACTGTAACTTTTGCTGTACCTGATGATGATCTTCCTTTTATCGCAAATGGAGAATGGATTCGTTACCTTCTTCTTGCAAGAATGTTGAGATTAATAAGACTCCTAATGCATGTCAAGAGATACCGAGCCTTTGTGGCAACTTTCTTGACTCTAATACCAAGTTTGATGCCATACCTAGGGATCATATTTTGTGTCTTATGCATTTATTGTTCGCTTGGTGTACAGCTTTTTGGTGGAATTGTTAATGCTGGAAACCCCGAATTGGAATCGACAGCTCTTGCTGAAAATGACTATTTGGTTTTCAATTTCAATGATTACCCTAATGGAATAGTGACACTTTTCAATTTTCTTGTCACGGCAACCTGGGATGAAGTGATGACGAGTTACAAGGAACTAACTGGGACTTCGTGGACTTATTTGTACTTCATTAGCTTCTACTTAGTTACTGTTTTGCTGCTTCTGAACTTGGTTATTGCTTTTGTCTTGGAGGCATTCTTTGCTGAAATGGATCTTGAGTCATCAGAAAGTTCTGAAGAAACGGACAAGGATGTTGAAGGAGATAAATATCGAAAACGGTCTATTGGCACTAAAACACGAAGCCAGAGGGTTGATGCTCTTCTTCATCATATGTTGAGTGCCGAGTTGTGTCAAAATCAGCCTTCCAATACAGCAACTTGA 2214 0.3866 MEQSLLRGESSGLGSRRRGLFRRSDAITHGSNYEKAAALIDLAEDGVGLPEQILDSSNFQNYARFYFVFTKFNLIWSLSYFALIVLNFLEKPLWCKKLATQSCNDREYFYLGQLPYLTDAECLIYEGITLLVIIIHTFFPLSYEGSRIYWKNAFNQFKVFCLLVLVADTLLYVFYLSPLAFDFLPFRIAPYVRVVLFVLNIRELRETITILFGMLDTYLNVLALGLLFLVFASWVAYVFFEDTIQGKTVFTSYGATLYQMFLLFTTSNNPDVWVPAYKSSRWYCLFFVLFVLVGVYFVTNLILAVVYDSFKSELVKQVFEKDLLRRTMLEKAFNLLDTLNIGALNKNQCIRLFEELNKYRTLPKISSEEFELIFDELDDSHDIKINKDEFADICNAIALKFQKEDVMSYFEYLAFYHWPSSKRLKEFVKTPMFGYIVSFILVVNLVAVIIETTLDIENNSGQKLWQIVEFVFGWIYVVEMLLKIYAYGFENYWRDGQNRFDFIITVIIVIGETVTFAVPDDDLPFIANGEWIRYLLLARMLRLIRLLMHVKRYRAFVATFLTLIPSLMPYLGIIFCVLCIYCSLGVQLFGGIVNAGNPELESTALAENDYLVFNFNDYPNGIVTLFNFLVTATWDEVMTSYKELTGTSWTYLYFISFYLVTVLLLLNLVIAFVLEAFFAEMDLESSESSEETDKDVEGDKYRKRSIGTKTRSQRVDALLHHMLSAELCQNQPSNTAT 737
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g02075 737 PANTHER TWO PORE CALCIUM CHANNEL PROTEIN 1 1 732 IPR044581 GO:0005245
Viun4g02075 737 SUPERFAMILY Voltage-gated potassium channels 430 677 - -
Viun4g02075 737 Pfam Ion transport protein 125 312 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Viun4g02075 737 Pfam Ion transport protein 431 677 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Viun4g02075 737 MobiDBLite consensus disorder prediction 688 708 - -
Viun4g02075 737 Gene3D - 203 315 - -
Viun4g02075 737 Gene3D - 320 397 - -
Viun4g02075 737 FunFam Two pore calcium channel protein 1 423 556 - -
Viun4g02075 737 MobiDBLite consensus disorder prediction 693 708 - -
Viun4g02075 737 Gene3D - 557 716 - -
Viun4g02075 737 Gene3D - 422 556 IPR027359 -
Viun4g02075 737 SUPERFAMILY EF-hand 328 395 IPR011992 -
Viun4g02075 737 FunFam Two pore calcium channel protein 1 557 714 - -
Viun4g02075 737 FunFam Two pore calcium channel protein 1 203 314 - -
Viun4g02075 737 ProSiteProfiles EF-hand calcium-binding domain profile. 365 400 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g02075 Viun-Chr4 36415526 36444594 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun4g02075 1 737 Ion Channels AT4G03560 66.396 0.0 1026
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g02075 K16900 - gmx:100806160 1281.16