Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g02031 ATGACTCATGAGGATTGGGATCTCTTTGCCATCGTTAGAAGTTGTAAAGCTGCCACCTTTACTGCCACCACAACCACACAAAACCCACCCACCGTGACTTCCACCGCCGCTTCTATATCTCCGAACACCACCTCTTGCTTTGATTCCGGCCACGAGAATGGCTCATTCTCTTTCCCCAATCTTGTGCAGCCACCGACCAATGAGTCTCAAGAGCTTCACCAGTTGCTAATAAACTTCAACCCCACCACCACCACCTCCACCATTTCTAGCACTATCACTAGTGCTATTGGCATCAATCCCAATTCCACTTTTTCTGAAGTTGCGGGATTCATTGGACAACAGCATATACAACAAGGTCATCACCATCATCTTGTTCCTGCTCCCACAAATCACACCTCCATTGGAGCACCCTCCACTACTGCTTTTGACAGATTCCAACACCAGCACCACCAACAACAACATCAAGCCCAAACCCCAGAACAACAGTTACAGAAGCAAAATCTGCCTCAACTTCGAGCATCCCAAACAAGTCCTATTCTTTCACCAACTACGCAATCACAAACACCCAGATCAAGAAAGAGAAAGAACCACCAGAAGAAAATTGTGCGTCATGTAACCGCAGACAACCTCTCAGCAGACTCATGGGCATGGCGAAAATATGGTCAAAAACCAATCAAAGGCTCTCCGTATCCAAGATGCAGTAGCTGCAAAGGCTGTGCTGCGAGAAAGCAAGTGGAGCGAAGCACCACCGAACCCAACTCGTTCATCGTCACCTACACCGGCGAACACAAACACGCCAAACCCGTTCACCGGAACTCCCTCGCCGGCAGCACCCGAACCAAGCCATCTCCGACCCGTTTACCCGAAGCCAACGAAACTGTTTCTGGTATCAAAGAAAACGCGTGTTCATCGACTTCTGAGCTTTCTACCACGTCGTTGAAGTCCGGCACGCCGGAGAACGAGGAAACAGTCGCCGCCGGTGAACCTGATTTCCCTGAGATGGAAATTGACCCTGACGCGTTGTCTGATAACGACTACGACCTTCTGATACCCAACACGGGTGCCATGTCGGACGCTGTTCTCTTGGGGTTGACCAATGGAGCTGAAACAAAGATATCGGATCCGAATAGCGAATCCGGGTTGACCCAGTCCAAATCAGACCCTTCTTCCAACCCGTTGTAG 1182 0.5 MTHEDWDLFAIVRSCKAATFTATTTTQNPPTVTSTAASISPNTTSCFDSGHENGSFSFPNLVQPPTNESQELHQLLINFNPTTTTSTISSTITSAIGINPNSTFSEVAGFIGQQHIQQGHHHHLVPAPTNHTSIGAPSTTAFDRFQHQHHQQQHQAQTPEQQLQKQNLPQLRASQTSPILSPTTQSQTPRSRKRKNHQKKIVRHVTADNLSADSWAWRKYGQKPIKGSPYPRCSSCKGCAARKQVERSTTEPNSFIVTYTGEHKHAKPVHRNSLAGSTRTKPSPTRLPEANETVSGIKENACSSTSELSTTSLKSGTPENEETVAAGEPDFPEMEIDPDALSDNDYDLLIPNTGAMSDAVLLGLTNGAETKISDPNSESGLTQSKSDPSSNPL 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g02031 393 MobiDBLite consensus disorder prediction 263 340 - -
Viun4g02031 393 SMART WRKY_cls 211 267 IPR003657 GO:0003700|GO:0006355|GO:0043565
Viun4g02031 393 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 5 334 IPR044810 GO:0003700
Viun4g02031 393 MobiDBLite consensus disorder prediction 117 200 - -
Viun4g02031 393 MobiDBLite consensus disorder prediction 326 340 - -
Viun4g02031 393 SUPERFAMILY WRKY DNA-binding domain 206 268 IPR036576 GO:0003700|GO:0006355|GO:0043565
Viun4g02031 393 ProSiteProfiles WRKY domain profile. 206 268 IPR003657 GO:0003700|GO:0006355|GO:0043565
Viun4g02031 393 Gene3D WRKY domain 194 261 IPR036576 GO:0003700|GO:0006355|GO:0043565
Viun4g02031 393 MobiDBLite consensus disorder prediction 369 393 - -
Viun4g02031 393 MobiDBLite consensus disorder prediction 131 189 - -
Viun4g02031 393 MobiDBLite consensus disorder prediction 273 319 - -
Viun4g02031 393 Pfam WRKY DNA -binding domain 213 265 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g02031 Viun-Chr4 36094580 36096596 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun4g02031 190 285 WRKY Transcription Factor Family AT5G52830 73.000 1.30e-44 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Viun4g02031 WRKY 2.5e-17 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g02031 - - gmx:100796829 491.886