Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g02021 ATGTTACCTTTTGGAAATCTCTACAAGTTGCAGCATCTTGATCTTTGGCACAATTTTCTTGAAGCAAATATACCATCTTTTCTTGGAAATCTCTCCCAATTGCAACATCTTCCTCTCAGTTGCTATTATTTTGAAGGAAATATACCGTCCCAACTTGGGAATCTCACCAAGTTGGAACAGCTCTATCTTGGAGGATATCTTGGAGGAGGTATCAAAATTGAAGATGGAGGTCAGTGGCTCTCAAATCTCCTTTCTTTAACCCATTTTTCCTTGGTATCTATATCAAATCTTGATCGTTCTTATAGTTGGTTAAAAATGATTGCGAAGCTACCCGAACTAAGCGAACTGAGTTTAGTTGGTTGTAGCCTTTCCGATCATTTCATTCTCTTATCCAAGCCTTCTAAGTTGAATTTCTCTACTTCCCTCTCTGTCCTTGATCTTTCTCAGAACACCTTCACGTCACCAATGGTATTCCAGTGGGTGTCAAACATCACTTCCAACCTTTTTGAGCTTGACCTTAGTGCTAACCACTTGGAGGGTTTTACATCAAGTGATTTTGGTACGGTCAAGAATTCGCTTAGGCATCTTGACCTCTCCTCTAATAATTTCAAGGCCAAAGATTTGAAATCTTTTACAAATATATGCACCTTACATTCTTTATACTTGTCTTCAAACAAGTTCACAGAAGACCTTCCTTCCATTCTTAGTAATTTGTCCCGTGGTTGTGTTAGACACTCATTGCAAAAATTGGATCTTTCATCTAATCACATCACTGGCACTTTGTCTGACATTTCAGTATTCTCCTCTTTGAAAACATTGTTTCTTCAGACAAATCGGTTAAGTGGAAGGATACCTGAAGGTGTGAAGTTACCATCTACTTTGGAGGATTTGTCAATTAGCGAAAATTTCTTTAAAGGTGGAATTCCAAAATCTTTTGGGAATGCATGTGCTTTGCACTCATTTGACATGAGTGGTAATAACTTGAATGTTGAGCTTCCAACGATAATTTCTCACTTGTCAGGATGTGCTAGATATTCATTGCAAGAATTATATCTACATATGAATAAAATCATTGGTACACTACCAGACTTCTCAACATTTACATCTTTAAAAGTATTATATCTTTCTGAAAATAAGCTAAATGGAGAGATTCATAAGGATATTCAATTTCCACATCAATTGGAGGAACTCGACGTGCATTCAAATTCTTTAAAAGGTGTGCTTAGTGATTACCATTTCACTAACATGTCTAAGTTACATGTATTGGATTTATCTGATAATTCATTGGCCTTGACATTTACCCAAAATTGGGTTCCACCTTTTCGGTTGTTCACCATAAAGTTGAGATCTTGCAACTTAGGTCCAGCATTTCCGAAATGGTTGCAAACACAAAACAAATATTTTTATATTGATATTTCAAAAGCTGCAATATCAGATATTGTTCCCAAATGGTTTTGGGCTAAATTACCACTGCAACAAGGTTCGAAAATCGCGAACCCTCTTCTTCCTCCCCGCGCCAGCCTCTGCAACTCTCTCTCTCTCCTCCCCAACTCCCCGGAGTTCGTCTTCACCTTCATGGCGGTCTCCATGCTCGGCGCCGTCGCCACCACCACCAACCCCTCCTACACCGCCGCCGAACTCGCCAAGCAACTGGACGTCTCCAACGCCAAGCTCGTCGTCACGCTCTCCACCCACGTCCACAAGCTCAACAACCAGCAAGCGCAGCACCACTTCTTCAAGGTGGCAACCGTCGACGACCCACCGGAGAATTGCTGGGCTTTCCCGGAGGGCGACGAGAGTGAGGTTTCGGAGGTTGAGATATCAGTGGAGGACACGGTGGCGCTGCCGTTTTCGTCGGGGACGACGAGGCTGGCGAAGGGGGTGATTCTGACGCACAAGAGTTTGGTAACCAGCGTGGCGCAACAGATAGAGGGAGAGAACCCGCACATGTACCTGAAAGAAGAGGACGTTGCTGATCCAGAAGTTTGA 1989 0.4238 MLPFGNLYKLQHLDLWHNFLEANIPSFLGNLSQLQHLPLSCYYFEGNIPSQLGNLTKLEQLYLGGYLGGGIKIEDGGQWLSNLLSLTHFSLVSISNLDRSYSWLKMIAKLPELSELSLVGCSLSDHFILLSKPSKLNFSTSLSVLDLSQNTFTSPMVFQWVSNITSNLFELDLSANHLEGFTSSDFGTVKNSLRHLDLSSNNFKAKDLKSFTNICTLHSLYLSSNKFTEDLPSILSNLSRGCVRHSLQKLDLSSNHITGTLSDISVFSSLKTLFLQTNRLSGRIPEGVKLPSTLEDLSISENFFKGGIPKSFGNACALHSFDMSGNNLNVELPTIISHLSGCARYSLQELYLHMNKIIGTLPDFSTFTSLKVLYLSENKLNGEIHKDIQFPHQLEELDVHSNSLKGVLSDYHFTNMSKLHVLDLSDNSLALTFTQNWVPPFRLFTIKLRSCNLGPAFPKWLQTQNKYFYIDISKAAISDIVPKWFWAKLPLQQGSKIANPLLPPRASLCNSLSLLPNSPEFVFTFMAVSMLGAVATTTNPSYTAAELAKQLDVSNAKLVVTLSTHVHKLNNQQAQHHFFKVATVDDPPENCWAFPEGDESEVSEVEISVEDTVALPFSSGTTRLAKGVILTHKSLVTSVAQQIEGENPHMYLKEEDVADPEV 662
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g02021 662 Gene3D - 514 631 - -
Viun4g02021 662 SUPERFAMILY L domain-like 166 502 - -
Viun4g02021 662 SUPERFAMILY Acetyl-CoA synthetase-like 514 644 - -
Viun4g02021 662 SUPERFAMILY RNI-like 4 234 - -
Viun4g02021 662 Gene3D - 632 657 - -
Viun4g02021 662 ProSiteProfiles Leucine-rich repeat profile. 246 268 IPR001611 GO:0005515
Viun4g02021 662 Pfam AMP-binding enzyme 514 643 IPR000873 -
Viun4g02021 662 Gene3D Ribonuclease Inhibitor 2 71 IPR032675 -
Viun4g02021 662 Gene3D Ribonuclease Inhibitor 72 493 IPR032675 -
Viun4g02021 662 PRINTS Leucine-rich repeat signature 247 260 - -
Viun4g02021 662 PRINTS Leucine-rich repeat signature 416 429 - -
Viun4g02021 662 Pfam Leucine Rich Repeat 9 30 IPR001611 GO:0005515
Viun4g02021 662 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 5 339 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g02021 Viun-Chr4 35899378 35901999 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun4g02021 514 657 Monolignol Biosynthesis Gene Families AT3G21240 53.691 1.02e-39 150
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g02021 - - vun:114180840 1280.77