Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g02018 ATGGCTTCCGATCTTGAAGCGAAGGCCAAAGAAGCCTTTGTCGAAGACCACTTCGAACTCGCAGTGGACCTTCTCTCTCAGGCAATTAACCTCGAACCCAACAAAGCCGAACTCTACGCCGACCGCGCTCAAGGCAACATCAAATTGAACAACTTAACTGAGGCTGTTGCTGATGCTAACAAAGCAATTGAATTGAATCCTTCTCTTGCAAAAGCATATTTGCGGAAAGGTACTGCATGCTTGAAGCTTGAGGAGTATCAGACTGCCAAGGCTGCTCTGGAGACTGGTGCTTCATTGTCTCCAGACGACCTAAGATTTGTCAATTTAATCAAAGAGTGCGATAAGCTCATTGCAGAGGAATCTTATACCACCATACCTATACAGGAAAAGACCATAGCACAGGATGATAATCCAAAAGATGTTCAGCAACAGGATGATCTTCCAGAGAAGCCACCAGTTGCAGTAAATAAACCTAAATATAGGCATGAATTCTACCAGAAACCTGATCAGGTGGTTGTAACCATATTTGCAAAGAAAATCCCCAAGGAAAGCATTACTGTTGAATTTGGCGAACAAATACTAAGTGTTAGCATTAATGTCCCAGGGGAAGATGCATATGTTTTTCAAACTCGCTTATTTGGAAAGATTGTACCCTCCAATTGCCGGTATGAAGTTTTGACAACCAAAATTGAAATTCGCCTTGAGAAAGCAGAACCTATTCATTGGTCATCTCTTGAATTCACCAAAAACGTTGTAGTTCCACAGAGAGTTAATGCCTCTTCAGTTACTGCAAGTAATAGACCTTCTTACCCGTCCTCAAAACAAACCAGAGATTGGGACAAGATCGAAGCTGAAGTCAAGAAAGAGGAGAAAGATGAAAAGCTCGACGGGGATGCTGCATTGAACAAGTTTTTCCGGGAAATATACCAAGATGCAGATGAGGATACAAGAAGAGCAATGAAAAAGTCATTTGTGGAGTCTAATGGAACTGTGCTGTCCACAAACTGGAAAGAAGTGGGATCAAAGAAGGTGGAGGGAAGTCCCCCTGATGGCATGGAGTTGAAGAAATGGGAATATTAA 1080 0.4241 MASDLEAKAKEAFVEDHFELAVDLLSQAINLEPNKAELYADRAQGNIKLNNLTEAVADANKAIELNPSLAKAYLRKGTACLKLEEYQTAKAALETGASLSPDDLRFVNLIKECDKLIAEESYTTIPIQEKTIAQDDNPKDVQQQDDLPEKPPVAVNKPKYRHEFYQKPDQVVVTIFAKKIPKESITVEFGEQILSVSINVPGEDAYVFQTRLFGKIVPSNCRYEVLTTKIEIRLEKAEPIHWSSLEFTKNVVVPQRVNASSVTASNRPSYPSSKQTRDWDKIEAEVKKEEKDEKLDGDAALNKFFREIYQDADEDTRRAMKKSFVESNGTVLSTNWKEVGSKKVEGSPPDGMELKKWEY 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g02018 359 SUPERFAMILY HSP20-like chaperones 144 254 IPR008978 -
Viun4g02018 359 CDD p23_CS_SGT1_like 163 246 - -
Viun4g02018 359 Pfam SGS domain 277 357 IPR007699 -
Viun4g02018 359 ProSiteProfiles TPR repeat profile. 70 103 IPR019734 GO:0005515
Viun4g02018 359 SMART tpr_5 2 35 IPR019734 GO:0005515
Viun4g02018 359 SMART tpr_5 36 69 IPR019734 GO:0005515
Viun4g02018 359 SMART tpr_5 70 103 IPR019734 GO:0005515
Viun4g02018 359 Pfam CS domain 161 236 IPR007052 -
Viun4g02018 359 ProSiteProfiles SGS domain profile. 269 359 IPR007699 -
Viun4g02018 359 PANTHER PROTEIN SGT1 HOMOLOG 1 357 IPR044563 GO:0051087
Viun4g02018 359 Pfam Tetratricopeptide repeat 36 68 IPR019734 GO:0005515
Viun4g02018 359 Pfam Tetratricopeptide repeat 70 103 IPR019734 GO:0005515
Viun4g02018 359 ProSiteProfiles TPR repeat profile. 36 69 IPR019734 GO:0005515
Viun4g02018 359 Gene3D Tetratricopeptide repeat domain 1 124 IPR011990 GO:0005515
Viun4g02018 359 SUPERFAMILY TPR-like 3 113 IPR011990 GO:0005515
Viun4g02018 359 ProSiteProfiles CS domain profile. 157 246 IPR007052 -
Viun4g02018 359 Gene3D - 154 261 IPR008978 -
Viun4g02018 359 MobiDBLite consensus disorder prediction 130 153 - -
Viun4g02018 359 FunFam Protein SGT1 homolog 1 130 - -
Viun4g02018 359 FunFam Protein SGT1 homolog A 155 259 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g02018 Viun-Chr4 35859729 35864327 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun4g02018 1 101 U-box Gene Family AT3G07370 29.524 3.35e-06 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g02018 K12795 - gmx:100780174 617.461