Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g01989 ATGGAACAGAAACACGTTCTGTTGTCAGCATTGAGCGTTGGGGTTGGGTTGGGTGTGGGACTTGGGTTGAGCTCAGGGCAGAAATGGGTTGGCGGGTATCGTGACTCTGATGAGCTTTCCCTGGAGCAGATTATGCAGGAGCTCAAGAAGCTGGTGGTTGAAGGAAGGGATGGAAAGCATACATTTGAGGACTTTCCATATTACTTAAGTGAAAGAATTCGTGCTTTGTTGACAAGTGCTGCATATATTCATTTAAAGCATCTTCACTTTTCCAAGCACACCAGGAACCTCTCACCAGCAAGCAGGTCTATTTTGCTATCTGGTCCAGCAGAATCTTACCAGCAAGCCCTTGCCAGAGCTTTAGCTCATTACTTTGAATCAAAGTTGCTGTTGTTAGATATTACCGACTTCTCTTTGAAGTTGCAGAACAAATTTGGATGTTCCAGAAAAATACCATCTTTGAAAAGGTCAATATCTGAGGCAACCTTGGAGCGAATGTCTGGTTTGTTTGGTTCCTTTTCGATGCTTTCTTCACAAGGAGAAACAAGAGGAATTTTGCGTCAACAAAGCAGTGCGGCTGAAAGTTCCAATCCTCCAAAGCTTAGGAGGAATGCTTCTGCTGCATCTGATATAAGTAGCACTTCTTCCCAGAGTGGTCCAACACTTCCAGCACGTTTGAAGCGCACAAGTAGCTTGTGTTTTGATGAGAAGCTCTTTGTGCAGGCACTCTACAAGCTTTTGGTTTCTATCACAGAAACTAGTTCCATCATTTTATACATAAGGGATGTTGAGAAGCTCGTTCTCCAATCAAGATTATATAATTTACTACAAAAAATGATAAAGAAACTATCAGGCTCAGTGTTGATACTTGGGTCCCAGATATTAGATTCAGAAGACGATTGCAAAGAAGTTGATGAAAGGCTCTCTGCGCTATTCCCCTACAACATTGAAATCAGAGCTCCTGAAGATGAAACTCAATCTGGCAATTGGAAAGGATCACTGGAAGAGGATATGAAAGCTATTCAGTTCCAAGATAACAGAAACCACATTGCTGCAGTACTAGCAGCAAATGACATTGAATGTGATGACTTGAACGCAGTCTGCCATTCAGATACTATCGTACTCAGCAATTATATTGAAGAAATTGTAGTATCTGCAATATCTTACCATTTGATGAATACCAAGGATCCAGAATATCGAAACGGAAAGCTAGTTATATCAGCCAACAGTTTGTCCCATGGATTGAGTCTTTTCCAGGAAGGCAAGAGTAGTGGGAATCTGAAGACTAATGAATCTAACAAGGAAAATGCTGGGGAAAATGTCGCTGGTGCAAAGAATGAAGTTAAGAGTGACAATCAAGCACCTGAAAACAAGAATGAGACAGAGAAATCCATCCCGGTAACAAAGAAAGAGGGCGAAAATCCTCCACCTGCAAAAGTAGAAATTCCTGACAACGAGTTTGAGAAGCGCATAAGACCTGAGGTTATCCCAGCAAATGAAATAGGGGTTACATTTGCAGATATTGGTGCATTGGATGAGATCAAAGAATCACTTCAAGAGCTGGTAATGCTTCCCCTTAGAAGGCCTGATCTCTTCAAAGGGGGGCTGCTAAAGCCGTGTAGAGGTATATTGCTTTTTGGGCCTCCTGGTACTGGGAAAACAATGCTAGCAAAAGCCATTGCAAATGAAGCTGGTGCAAGTTTCATTAATGTCTCAATGTCCACTATTACATCAAAATGGTTTGGAGAAGATGAAAAGAATGTCCGAGCTCTATTCACACTGGCAGCTAAGGTTGCTCCAACAATCATCTTTGTTGATGAAGTTGACAGCATGCTTGGACAGAGGACTAGAGTAGGAGAGCATGAGGCGATGAGGAAGATAAAAAATGAGTTCATGACACATTGGGATGGGCTATTAACAGGACCTAATGAGCAGATTTTGGTTCTTGCTGCAACCAACAGACCATTTGACCTTGATGAAGCTATCATAAGACGGTTTGAGCGCAGGGTCCTGGTTGGTCTTCCATCTGCTGATAACAGGGAGAAGATCTTGAAGACTCTTCTGGCCAAAGAAAAACATGAAAACTTAGACTTCAAAGAGTTGGCAACCATGACAGAAGGATATACTGGAAGTGATCTTAAGAATTTGTGCATCACTGCTGCTTATCGACCTGTTAGAGAGCTAATACAGCGGGAGAGAGTAAAAGAAATGGAAAAGAAGAAAAGAGAGACTGAAGGCCAAAACTCTGAAGATGTTTCAAACAACAATGATAATAAGGAAGACCAAGAAATTACCCTCAGGCCTTTAAATATGGAAGACATGAAGCAGGCTAAGAGTCAGGTTGCTGCAAGTTTTGCATCAGAAGGATCCGTAATGAATGAGTTGAAGCAGTGGAATGATTTATATGGAGAAGGAGGTTCAAGGAAGAAGCAACAACTCACTTACTTCCTTTAG 2454 0.4181 MEQKHVLLSALSVGVGLGVGLGLSSGQKWVGGYRDSDELSLEQIMQELKKLVVEGRDGKHTFEDFPYYLSERIRALLTSAAYIHLKHLHFSKHTRNLSPASRSILLSGPAESYQQALARALAHYFESKLLLLDITDFSLKLQNKFGCSRKIPSLKRSISEATLERMSGLFGSFSMLSSQGETRGILRQQSSAAESSNPPKLRRNASAASDISSTSSQSGPTLPARLKRTSSLCFDEKLFVQALYKLLVSITETSSIILYIRDVEKLVLQSRLYNLLQKMIKKLSGSVLILGSQILDSEDDCKEVDERLSALFPYNIEIRAPEDETQSGNWKGSLEEDMKAIQFQDNRNHIAAVLAANDIECDDLNAVCHSDTIVLSNYIEEIVVSAISYHLMNTKDPEYRNGKLVISANSLSHGLSLFQEGKSSGNLKTNESNKENAGENVAGAKNEVKSDNQAPENKNETEKSIPVTKKEGENPPPAKVEIPDNEFEKRIRPEVIPANEIGVTFADIGALDEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEAGASFINVSMSTITSKWFGEDEKNVRALFTLAAKVAPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTHWDGLLTGPNEQILVLAATNRPFDLDEAIIRRFERRVLVGLPSADNREKILKTLLAKEKHENLDFKELATMTEGYTGSDLKNLCITAAYRPVRELIQRERVKEMEKKKRETEGQNSEDVSNNNDNKEDQEITLRPLNMEDMKQAKSQVAASFASEGSVMNELKQWNDLYGEGGSRKKQQLTYFL 817
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g01989 817 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 44 816 - -
Viun4g01989 817 Coils Coil 427 447 - -
Viun4g01989 817 FunFam p-loop nucleoside triphosphate hydrolase superfamily protein 502 677 - -
Viun4g01989 817 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 502 736 IPR027417 -
Viun4g01989 817 Gene3D - 503 675 IPR027417 -
Viun4g01989 817 MobiDBLite consensus disorder prediction 187 222 - -
Viun4g01989 817 SMART AAA_5 539 676 IPR003593 GO:0016887
Viun4g01989 817 MobiDBLite consensus disorder prediction 422 481 - -
Viun4g01989 817 ProSitePatterns AAA-protein family signature. 646 665 IPR003960 GO:0005524|GO:0016887
Viun4g01989 817 MobiDBLite consensus disorder prediction 422 439 - -
Viun4g01989 817 MobiDBLite consensus disorder prediction 451 481 - -
Viun4g01989 817 Pfam ATPase family associated with various cellular activities (AAA) 543 673 IPR003959 GO:0005524|GO:0016887
Viun4g01989 817 Pfam AAA+ lid domain 695 737 IPR041569 -
Viun4g01989 817 Gene3D - 676 779 - -
Viun4g01989 817 MobiDBLite consensus disorder prediction 736 762 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g01989 Viun-Chr4 35486236 35493468 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun4g01989 503 734 Calmodulin-binding Proteins AT3G56690 39.407 2.79e-42 164
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g01989 - - gmx:100817952 1419.83