Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g01984 ATGGTTGAAACCGGCTCGGACGAGTGCAGTATGGTCCTTGTATCGAAAGTCTTCCTGACAAGGGTTTCAGGGTTTCAATTTCGTGAACCTCCTTCTTCTCCGCGCCTCTGCAACTCTCTCCTCTCTCTCTCCGCTGCTGCCAACCCAAATTTTTCTCCTCTGGTTCATGTGTTGGTGCTCTTTCTCTTCCTCGAGAACATTGTTTTCCGCAGTGAGGACGCAACTGTTGCGGTGGCGCATCATGTCCACGCACCACCAGCGTGGAAGCATTACCGAGGTGTGAGGCGCAGGCCATGGGGGAAGTTCGCGACGAAGATAAGGAATCTGAAGAAGAACGGAGCTAAGGTTTGGCTTGGAACTTTTGACACAAAGGAGAAAGCGGCGAGGAAGGAAGAGAAGGACGCGTCGCTGCCGGTTGGTGGCGCGGTGGCTGGTGGCGCGGTGGCTGGTGGCGCAGTTGGTGCGTGA 468 0.5534 MVETGSDECSMVLVSKVFLTRVSGFQFREPPSSPRLCNSLLSLSAAANPNFSPLVHVLVLFLFLENIVFRSEDATVAVAHHVHAPPAWKHYRGVRRRPWGKFATKIRNLKKNGAKVWLGTFDTKEKAARKEEKDASLPVGGAVAGGAVAGGAVGA 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g01984 155 ProSiteProfiles AP2/ERF domain profile. 90 129 IPR001471 GO:0003700|GO:0006355
Viun4g01984 155 PANTHER DNA-BINDING DOMAIN 81 130 IPR044808 GO:0003700|GO:0009873
Viun4g01984 155 CDD AP2 89 129 IPR001471 GO:0003700|GO:0006355
Viun4g01984 155 PRINTS Ethylene responsive element binding protein signature 114 130 IPR001471 GO:0003700|GO:0006355
Viun4g01984 155 PRINTS Ethylene responsive element binding protein signature 91 102 IPR001471 GO:0003700|GO:0006355
Viun4g01984 155 SUPERFAMILY DNA-binding domain 90 131 IPR016177 GO:0003677
Viun4g01984 155 Pfam AP2 domain 90 130 IPR001471 GO:0003700|GO:0006355
Viun4g01984 155 Gene3D AP2/ERF domain 89 136 IPR036955 GO:0003700|GO:0006355
Viun4g01984 155 SMART rav1_2 90 136 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g01984 Viun-Chr4 35322678 35324604 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun4g01984 89 128 AP2-EREBP Transcription Factor Family AT5G47220 75.000 7.06e-16 70.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Viun4g01984 AP2 6.2e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g01984 K09286 - vun:114180832 244.202