Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g01980 ATGAATGTTATTGATCGATGTTGGAGAAAAAATCCTGAGTGGTGGAGACACCAATGTCAACTAGCCACGTGTTCTGTGGGTTATGCTGGCAAGATGATAAACAACATTGGTAATGACCTCATTTATTATAAAGTTACTGACTCTAGTGATGATCCAATAAATCCCAAGCCCAACACGTTGAGGTATGGAACTTCTATTATTCAAGGTAAAGTGTGGATCACATTCCAAAAGGACATGCAAATTACTCTAGAGAAACCCCTTCTCATTAGTAGTTTCACCACCATCGATGGTCGAGGCGTTAACGTCCACATCGCTAATAATGCATGCTTAATGATCTTTAAGGCCACCAACATAATTATCCATGGCATTCGAGTTCACCATTGCCAACCTCAAGCCCCTGGGATTGTGATGGGGCCTGAAGGAAAGGTGATTCCTTTAGGTCATGTAGACGGAGATGCAATAAGACTGGTTACTGCTTCAAAAATTTGGATTGACCATAATACACTTTCTGATTGTCAAGATGGTTTGCTTGATGTAACTCGAGGTTCTACTGATGTGACTATCTCCAATAATTGGTTCAAAAACCAAGATAAGGTTATGCTTCTTGGACATGATGATGGATATGTGAGAGACAAGAATATGAAGGTTACAGTGGTGTACAATCATTTTGGACCTAATTGCAATCAACGTATGCCAAGAATTCGTCATGGATATGCACACGTAGCCAACAATTTTTATCAAGGATGGCTTCAATATGCCATTGGTGGAAGCATGGAACCAAGTCTTAAAAGTGAAGCTAACCTCTTTGTTGCACCAATGATAGGAAATAAGGAGGTGACATGGAGAAAGAGTAGTGATAAAAGTGGAGGTACATGGAACTTTCATTCGATAAGGGATATTTTTGAGAATGGAGCTTCCTTCAATATAACAAAAGAAGGAGATGTGAAAAAAACCGAATTATACTAA 966 0.3923 MNVIDRCWRKNPEWWRHQCQLATCSVGYAGKMINNIGNDLIYYKVTDSSDDPINPKPNTLRYGTSIIQGKVWITFQKDMQITLEKPLLISSFTTIDGRGVNVHIANNACLMIFKATNIIIHGIRVHHCQPQAPGIVMGPEGKVIPLGHVDGDAIRLVTASKIWIDHNTLSDCQDGLLDVTRGSTDVTISNNWFKNQDKVMLLGHDDGYVRDKNMKVTVVYNHFGPNCNQRMPRIRHGYAHVANNFYQGWLQYAIGGSMEPSLKSEANLFVAPMIGNKEVTWRKSSDKSGGTWNFHSIRDIFENGASFNITKEGDVKKTELY 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g01980 321 Gene3D - 1 320 IPR012334 -
Viun4g01980 321 SUPERFAMILY Pectin lyase-like 24 308 IPR011050 -
Viun4g01980 321 PRINTS Pollen allergen Amb family signature 252 271 IPR018082 -
Viun4g01980 321 PRINTS Pollen allergen Amb family signature 150 171 IPR018082 -
Viun4g01980 321 PRINTS Pollen allergen Amb family signature 86 102 IPR018082 -
Viun4g01980 321 PRINTS Pollen allergen Amb family signature 230 249 IPR018082 -
Viun4g01980 321 PRINTS Pollen allergen Amb family signature 292 316 IPR018082 -
Viun4g01980 321 PRINTS Pollen allergen Amb family signature 24 41 IPR018082 -
Viun4g01980 321 PANTHER PECTATE LYASE 18-RELATED 1 314 IPR045032 GO:0030570
Viun4g01980 321 SMART amb_all 78 275 IPR002022 -
Viun4g01980 321 Pfam Pectate lyase 88 269 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g01980 Viun-Chr4 35095261 35096534 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun4g01980 32 279 Polysaccharide Lyase AT5G09280 70.968 2.02e-141 399
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g01980 K01728 - gmx:100780437 575.089