Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g01976 ATGGCCTTTCTTAAACCTCAATTCTTGATTTTGGCTCTTTTGATTTTCTTTTTCCTTTCAAAACTTAGTTTTGCAAAGCAATCGAGGATAAATGGGTTGAAAATGAATGTTATTGACCGATGTTGGAGAAAAAATCCTGAATGGAGGAGACACCAATATCAATTAGCCACATGTTGTGTGGGTTATGCTGGCAAGATGATAAACAACATTGGTAATGACCTCATTCATTATAAAGTTACTGACTCTAGTGATGATCCTATAAATCCCAAGCCCAACACCTTGAGATATGGAACTTCTATTCTTCAAGGTAAAGTGTGGATCACATTCCAAAAAGACATGCAAATTGAACTAAAGAAACCCCTTCTCATTAGTAGTTTTACCACTATCGATGGTCGAGGTGTTAATGTCCACATCGCTAATAATGCATGCTTAATGATATTTAAGGCCACCAACATAATTATCCATGGCATTCGAGTTCACCATTGCAAACCTCAAGCCCCTGGGAGTGTGATGGGGCCTGAAGGAAAGGTGATTCCTTTAGGTCATGTAGACGGGGACGCAATAAGATTGGTTACTGCTTCAAAAATTTGGATTGACCATAATACACTTTATGATTGTCAAGATGGTTTGCTTGATGTAACACGAGGTTCTACTGATGTGACTATCTCTAATAATTGGTTCAAAAACCAAGATAAAGTTATGCTTCTTGGACATGATGATGGATATGTGAGAGACAAGAATATGAAGGTTACAGTGGTGTACAATCATTTTGGACCTAATTGCAATCAACGTATGCCAAGGATTCGTCATGGATATGCACATGTAGCCAATAATTTTTATCAAGGATGGCTTCAATATGCCATTGGTGGAAGCATGGAACCTAGTCTCAAAAGTGAAGCTAACCTCTTTGTTGCACCAACGATAGGAAATAAGGAGGTTACATGGAGAAAGAGTAGTGATAAAAGTGGAGGTACATGGAACTTTCATTCGGTAAGGGATATTTTTGAAAATGGAGCTTCTTTCAATATAACAAAAGGAGGAGGTGTGAAAAAACCGAATTATACTAAAGAACAAAATTTTAAAGTTCTTGATGCCAAATTCGTGAGATTGTTGACACGTTCATCTGGTGTGTTGCAATACAATAAGAATTCTATATATTGA 1161 0.3712 MAFLKPQFLILALLIFFFLSKLSFAKQSRINGLKMNVIDRCWRKNPEWRRHQYQLATCCVGYAGKMINNIGNDLIHYKVTDSSDDPINPKPNTLRYGTSILQGKVWITFQKDMQIELKKPLLISSFTTIDGRGVNVHIANNACLMIFKATNIIIHGIRVHHCKPQAPGSVMGPEGKVIPLGHVDGDAIRLVTASKIWIDHNTLYDCQDGLLDVTRGSTDVTISNNWFKNQDKVMLLGHDDGYVRDKNMKVTVVYNHFGPNCNQRMPRIRHGYAHVANNFYQGWLQYAIGGSMEPSLKSEANLFVAPTIGNKEVTWRKSSDKSGGTWNFHSVRDIFENGASFNITKGGGVKKPNYTKEQNFKVLDAKFVRLLTRSSGVLQYNKNSIY 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g01976 386 PRINTS Pollen allergen Amb family signature 326 350 IPR018082 -
Viun4g01976 386 PRINTS Pollen allergen Amb family signature 120 136 IPR018082 -
Viun4g01976 386 PRINTS Pollen allergen Amb family signature 184 205 IPR018082 -
Viun4g01976 386 PRINTS Pollen allergen Amb family signature 264 283 IPR018082 -
Viun4g01976 386 PRINTS Pollen allergen Amb family signature 286 305 IPR018082 -
Viun4g01976 386 PRINTS Pollen allergen Amb family signature 58 75 IPR018082 -
Viun4g01976 386 PRINTS Pollen allergen Amb family signature 357 380 IPR018082 -
Viun4g01976 386 PANTHER PECTATE LYASE 18-RELATED 33 383 IPR045032 GO:0030570
Viun4g01976 386 SUPERFAMILY Pectin lyase-like 58 342 IPR011050 -
Viun4g01976 386 Gene3D - 35 379 IPR012334 -
Viun4g01976 386 Pfam Pectate lyase 119 303 IPR002022 -
Viun4g01976 386 SMART amb_all 112 309 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g01976 Viun-Chr4 35034583 35036120 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun4g01976 66 313 Polysaccharide Lyase AT5G09280 72.177 6.28e-144 409
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g01976 K01728 - gmx:100780437 647.506