Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g01971 ATGGAAAATTTTTGGAGCATGATTTGTGGTGATTCTGTTGGTTCAAAGACTATGGGAAAGCTTTCGTGTTACGATTTCAAGTTTCTGAAAGATCCTTCGTTATGCATCAACCATTTATTGATAATTTCCTTTGATGCGTTACTCTTGATCATGTTATCTTTCGCTGTGATCCACAGGTCTTTCTCAAGACCATGTCAGGGTCTAATCCAAGTGGGAAGATATTCAAAATTGCAACTATGTTCTGCCATAACCAGTGGCTCTCTTGGGTTGTTGAATTTGTGTTTAGGCATTTGGTTTTTGGAGGAGAAGTTAAGGAAAAACAATACTACATTTCCCCTTCACTGGTGGGTGCTAGAACTTTTTCAGGGATTCACATGGTTGTTTGTGGGATTAACTGTAAGTCTCAAGCTGAAGCAACTTTCAAGAGTATGGTTATGGTTGTTCTCTATATTGACATTCTTTGTTTATGGTATTGTCTGTCTTTTATCCATGTCTTACTTAATTACCAGCACAGAACTATCCTTCAAGATCGTTTTAGATGTTTTATCTCTTCTTGGAGTCTTTCTACTACTTTCATGCACATATAGTGTATGTAAAATTGAAGACACTAACAGAGAAACTAGAGAAGGCCTTTATACCCCTATAAGCGACCAGTTCAATGGAGTTGATCCTACTAATAGGTATGTAACCCCATTTGCAAAAGCTGGATTCTGTAGTAGGATGTTGTTTTGGTGGTTGAGTCCACTCATGAAAAAGGGTCAAGAGAAAACCCTTGAGAATGAGGATATCCCAAAGTTGGGAGAGTTAGATCGAGCAGAAAGTTGTTATCTATTGTTTGAAGAACACTTGAACAAACAGAAAGAAAAAGATCCATCGTCACCTGTGTCAATTTTGCGGACAATAATTTTGTGCCATCAAAAAGAGATTTTGATATCAGGATTCTTTGCATTGCTTAAGGTGGTGACTGTGTCTTCTGGTCCTGTACTTCTAAATGCCTTTATACGGGTAGCTGAAGGTAATGAAAGTTTCAAGTATGAGGGCTATGTATTGGTCATATCACTTTTCATTATAAAGGTCATAGAGTCCCTATCACAAAGGCAGTGGTACTTCCGCAGTAGACTTATTGGGATGAAAGTTAGGTCATTGCTTACTGCAGCCATTTATAAAAAACTGTTGAGGTTGTCCAATGTTGCGAGATTGACACACTCTGGTGGTGAAATAATGAATTATGTGACTGTGGATGCTTATAGAATTGGAGAATTTCCATTTTGGTTTCACCAAACATGGACTACAAGTGTCCAACTATGTATTGCATTAGTGATACTTTTTCGTGCCATTGGGATGGCCACTATTGCCTCATTGGTGGTGATAGTTCTTACTGTGTTGTGCAATACTCCAATAGCTAAATTACAACACAAGTTTCAGACCGAACTTATGGTGTCACAAGATGAGAGATTGAAGGCTATTTCTGAAGCTCTTTTGAACATGAAAGTTCTAAAACTATATGCATGGGAAAACCATTTTAAAAATGCTATAGAGAAGTTAAGAAAAGTGGAACTCAAATTGTTAGCTGCAGTGCAACTACGAAAGGCATACAACGTAATTATCTTTTGGTGTTCGCCTGTTTTGGTTTCTGCTGCTTCCTTTGGGGTGTGTTACTTCCTTAAAGTTCCATTGCATGCAAATAATGTTTTCACATTTGTAGCAGCTCTACGGATTGTGCAAGAGCCAATTACAACCATCCCAGATGTTATCGGGGTGGTCATTCAGGCTAAGGTTGCTTTCGCTCGAATTATTAAGTTCCTTGAGGCACAAGAACTACAAAGTAACAGTTTTAGAAAAGAGAGCTCTGTTAACAGTCTTAATGACTCAATTTTAATCAAACATGCCGATTTTTCGTGGGAAGATAATGTATCAAAGCCAACATTGAGGAACATAAATCTGGAGATTAAACATGGGCAAAAGGTGGCTATTTGTGGAGAAGTTGGCTCAGGCAAATCAACCCTCTTATCACTGATTCTTGGAGAGGTTCCGATCACAAAAGGAACTATAGACGTTTATGGGAAATTTGCTTATGTTTCTCAAACAGCATGGATACAAACAGGTACTGTAAGGGAAAACATTTTGTTTGGATCGGAATTAGAAGCTGAAAGATATCAAGAAACACTTCATAGATCTTCACTAGTGAAGGACCTGGAGTTGTTTCCCAATGGTGACCTAACAGAAATAGGTGAGAGAGGAGTTACCTTAAGTGGAGGTCAGAAGCAGCGAATTCAACTTGCACGTGCTTTTTATCAGAATGCTGATATATATCTTTTGGATGATCCATTCAGTGCTGTTGATGCCCATACTGCCACAAATTTGTTTAATGATTATATCATGGAAGGACTTAAAGAGAAAACGGTATTAGTAGTAACCCATCAAGTTGACTTCCTCTCAGCCTTTGATTATGTTTTGTTAATTTCGAAGGGAGAAATCCTTGAAGTTGCTCCTTATCATCATCTATTGAGCTCAAGCAAAGAATTCCAGAACCTTGTCAATGCTCACAAGAAGACGGCTGGTTCTAACAAGCTTGTGAATGTTACTTTTTCCAAGAGACATCCAACTTCTGTTAGAGAGATTAGACAAGCTTTCATGATAAACCAATTCAACATAGCACATAGTAAATTGATAAAGCAGGAAGAGAGAGAGATAGGAGATACTGGGTTGAAGCCTTACTTACAATATTTGAATCAAATGAAGTGCTATATACTCTTCTCTGTTGCTGCTCTTTGTCACATTACATTTTCAATTTTCCAAATATTGCAAAACTCATGGATGGCTACTAATGTTGATAATCATCATGTCAGCACTTTGCTGTTGATTGTAGTTTACTTCTTGCTTGGAGTTATTTCAATACTTTTCATGTTCATCAGAAGTCTAAGTCTTGTTTCTTTGGGGTTTCTATCCTCAAAGTATCTTTTTTTACAATTAATGAACTCACTTTTTCGTGCACCAATGTCATTTTATGACTCTACACCATTAGGAAGGATACTTAGTAGGGTCTCATCAGATCTAAGCATTGTGGATCTTGATATTCCATTTAGCCTCACCTTTACTGTGGGAGCAACAATAAATGCTTATTCAACTCTGACAGTTTTAGCAGTTGTCACTTGGCCAGTCTTGGTTATCTCAATACCATTAGTTTATGTTGCAATTCGCTTGCAGAGATATTACTTTGCCTCTGCTAAAGAAGTAATGCGGATGAATGGCACAACAAAATCCTCTGTGGCTAATCATATTGCTGAAACTGTTGCTGGAGTTGTAACAATAAGGGCTTTTGAGGAGGAATATCGTTACTTTGTAAAGAATCTTGATTTGATTGACATCAATGCCAGTTCTTTCTTCCATAGTTTTGCCTCAAATGAGTGGTTGATCCTACGTTTAGAAACTGTAGCTGCAGTTGTTCTTTCCTTCTCAGCACTTTGCATGGTCTTGTTTCCACCTGGGACTTTTACATCTGGATTTATTGGCATGGCTCTCTCTTATGGCCTTACCCTAAGCTCTTCCTTAGTACTTTCAATCCAAAGTCAATGCAGCCTTGCAAATTACATAATATCTGTAGAGAGGTTAAATCAGTACATGCATATACAAAGTGAGGCTGAAGAAATAATAGAAACAAAACGCCCTCCTTTTAATTGGCCAGATGAAGGTGAAATAGAAGTAAAAGACTTGCAGGTACGATACAGGCCTGATGGACCACTTATACTCCATGGAATCACATGCACATTCAAAGCAGGACACAAGGTTGGAATTGTTGGAAGAACAGGCAGTGGAAAATCCACTCTTATTGCTTCTTTATTTCGTCTTGTGGAGGCAGCAGGTGGAAAAATTGTAGTTGATGGCATAGACATATCTTGTATTGGCCTTCATGATTTGAGGTCACGTTTTGGTGTTATACCTCAGGATCCTACCCTTTTTAATGGAACTGTTAGATACAATTTGGACCCTTTGTTTCAACACTCTGATAAAGAGATATGGGAGGTTCTTGGGAAGTGTCAGTTGCGAGAAGTTGTCCAAGAGAAAGAAGAGGGCTTAAACTCCTCAGTTGTTGAAGATGGATCAAACTGGAGCATGGGACAGAGGCAGCTATTTTGTTTGGGGCGTGCTATTTTGAGTAGTAGTAAGATATTGGTGCTAGATGAAGCTACAGCATCAATTGATAATGCAACTGATTTGATTCTGCAGAAAACCATTAGGACTGAATTTGCTGATTGTACAGTTATAACAGTAGCACACAGAATACCAACTGTGATGGATTGCACTATGGTTCTTTCAATCAGTGATGGAATATTGGTAGAGTATGCTGAACCAAATACCTTGATGAAGAGAGAAGGGTCATTGTTCAGACAACTTGTCCAAGAATATTGGTCTCATTTTCACTCTTCAGAATCCCATTGA 4440 0.3827 MENFWSMICGDSVGSKTMGKLSCYDFKFLKDPSLCINHLLIISFDALLLIMLSFAVIHRSFSRPCQGLIQVGRYSKLQLCSAITSGSLGLLNLCLGIWFLEEKLRKNNTTFPLHWWVLELFQGFTWLFVGLTVSLKLKQLSRVWLWLFSILTFFVYGIVCLLSMSYLITSTELSFKIVLDVLSLLGVFLLLSCTYSVCKIEDTNRETREGLYTPISDQFNGVDPTNRYVTPFAKAGFCSRMLFWWLSPLMKKGQEKTLENEDIPKLGELDRAESCYLLFEEHLNKQKEKDPSSPVSILRTIILCHQKEILISGFFALLKVVTVSSGPVLLNAFIRVAEGNESFKYEGYVLVISLFIIKVIESLSQRQWYFRSRLIGMKVRSLLTAAIYKKLLRLSNVARLTHSGGEIMNYVTVDAYRIGEFPFWFHQTWTTSVQLCIALVILFRAIGMATIASLVVIVLTVLCNTPIAKLQHKFQTELMVSQDERLKAISEALLNMKVLKLYAWENHFKNAIEKLRKVELKLLAAVQLRKAYNVIIFWCSPVLVSAASFGVCYFLKVPLHANNVFTFVAALRIVQEPITTIPDVIGVVIQAKVAFARIIKFLEAQELQSNSFRKESSVNSLNDSILIKHADFSWEDNVSKPTLRNINLEIKHGQKVAICGEVGSGKSTLLSLILGEVPITKGTIDVYGKFAYVSQTAWIQTGTVRENILFGSELEAERYQETLHRSSLVKDLELFPNGDLTEIGERGVTLSGGQKQRIQLARAFYQNADIYLLDDPFSAVDAHTATNLFNDYIMEGLKEKTVLVVTHQVDFLSAFDYVLLISKGEILEVAPYHHLLSSSKEFQNLVNAHKKTAGSNKLVNVTFSKRHPTSVREIRQAFMINQFNIAHSKLIKQEEREIGDTGLKPYLQYLNQMKCYILFSVAALCHITFSIFQILQNSWMATNVDNHHVSTLLLIVVYFLLGVISILFMFIRSLSLVSLGFLSSKYLFLQLMNSLFRAPMSFYDSTPLGRILSRVSSDLSIVDLDIPFSLTFTVGATINAYSTLTVLAVVTWPVLVISIPLVYVAIRLQRYYFASAKEVMRMNGTTKSSVANHIAETVAGVVTIRAFEEEYRYFVKNLDLIDINASSFFHSFASNEWLILRLETVAAVVLSFSALCMVLFPPGTFTSGFIGMALSYGLTLSSSLVLSIQSQCSLANYIISVERLNQYMHIQSEAEEIIETKRPPFNWPDEGEIEVKDLQVRYRPDGPLILHGITCTFKAGHKVGIVGRTGSGKSTLIASLFRLVEAAGGKIVVDGIDISCIGLHDLRSRFGVIPQDPTLFNGTVRYNLDPLFQHSDKEIWEVLGKCQLREVVQEKEEGLNSSVVEDGSNWSMGQRQLFCLGRAILSSSKILVLDEATASIDNATDLILQKTIRTEFADCTVITVAHRIPTVMDCTMVLSISDGILVEYAEPNTLMKREGSLFRQLVQEYWSHFHSSESH 1479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g01971 1479 Pfam ABC transporter transmembrane region 309 576 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Viun4g01971 1479 Pfam ABC transporter transmembrane region 917 1181 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Viun4g01971 1479 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 233 1467 - -
Viun4g01971 1479 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 917 1196 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Viun4g01971 1479 Gene3D - 620 854 IPR027417 -
Viun4g01971 1479 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1233 1467 IPR003439 GO:0005524
Viun4g01971 1479 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1224 1466 IPR027417 -
Viun4g01971 1479 ProSitePatterns ABC transporters family signature. 750 764 IPR017871 GO:0005524|GO:0016887
Viun4g01971 1479 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 627 848 IPR003439 GO:0005524
Viun4g01971 1479 FunFam ABC transporter C family member 10 293 606 - -
Viun4g01971 1479 FunFam ABC transporter C family member 5 883 1214 - -
Viun4g01971 1479 CDD ABCC_MRP_domain2 1231 1451 - -
Viun4g01971 1479 SUPERFAMILY ABC transporter transmembrane region 906 1215 IPR036640 GO:0005524|GO:0016020
Viun4g01971 1479 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 619 848 IPR027417 -
Viun4g01971 1479 Gene3D - 1216 1469 IPR027417 -
Viun4g01971 1479 FunFam ABC transporter C family member 3 1216 1468 - -
Viun4g01971 1479 FunFam ABC transporter C family member 5 613 856 - -
Viun4g01971 1479 Pfam ABC transporter 643 777 IPR003439 GO:0005524
Viun4g01971 1479 CDD ABC_6TM_ABCC_D2 919 1208 IPR044726 GO:0140359
Viun4g01971 1479 CDD ABC_6TM_ABCC_D1 311 598 IPR044746 GO:0140359
Viun4g01971 1479 SMART AAA_5 1259 1451 IPR003593 GO:0016887
Viun4g01971 1479 SMART AAA_5 652 825 IPR003593 GO:0016887
Viun4g01971 1479 Pfam ABC transporter 1250 1398 IPR003439 GO:0005524
Viun4g01971 1479 Gene3D ABC transporter type 1, transmembrane domain 279 606 IPR036640 GO:0005524|GO:0016020
Viun4g01971 1479 Gene3D ABC transporter type 1, transmembrane domain 883 1215 IPR036640 GO:0005524|GO:0016020
Viun4g01971 1479 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 310 590 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Viun4g01971 1479 SUPERFAMILY ABC transporter transmembrane region 298 603 IPR036640 GO:0005524|GO:0016020
Viun4g01971 1479 CDD ABCC_MRP_domain1 625 825 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g01971 Viun-Chr4 34907547 34913461 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun4g01971 438 872 Calmodulin-binding Proteins AT2G36910 25.000 2.74e-25 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g01971 K05666 - gmx:100787314 2220.66