Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g01965 ATGGAGGATTTTTGGAGCATGGCTTGTGGAGAAACTGATTGTCCTGGGAATGGAGGAAAACCACCCTTCTGTTACGACTTCAAGTTTTTGAAAGATCCTTCTACGTGCACCATCCAATTCTTGATCATCTGCTTTGATGTTTTGTTAATGATCATGCTAGCATTCATTTTGATCCAGAAGTCTTTGTTCAAACCATTTCGTGGTCAGTTTCAGGTGGAAAGATATTCAAACTTGCAGGTACTGTCTGCCATGACCAATGGTTTTCTGGGGTTGTTGTATGTGTGCTTAGGCATTTGGGTTTTAGAGGAGGAATTAAGAAAGAGACACACTCTCTTCCCTCTTAAGTTGTGGTTGGCAGAGCTTTTTCAAGGATTCAGATGGCTTTTTGTAGGCCTAAGTGTAAGTCTTCAGTTGAAACAACTTTCAAGATCATGGTTGTGGTTGTTTTCTCTTGTTACGTTATTTGTTTCATTTATTTTCTGTGTTCTATCCATGTCTTATGCAATTAGTAGCAGAAAATTGATCTTCAAGGAAGCTTTAGATTTTCTGTCTTTACCAGTGTCAATGTTACTACTCTTGTGTACTTATAAAGTACATAAACGTGAAGACACTGACGGAGAAATTGATGAAGGCCTTTACGACCCTTTGAATGATCACTGTAGTGAAGTTGATCCAGATAATCATGTGACTCCATTCGCCAAAGCTGGATTCCTTAGTAAGATGTCATTTTGGTGGTTGAATCCATTGATGAAAAGGGGTCAAGAGAAAACACTTCAGGATGAGGATATGCCGAAGTTGCGAGAATCGGATCGAACAGAAAGTTGCTACTTGTCCTTTTTAGAACGTTTGAACAGGGAAAAAGGAAAAGAACCATTATCACAATCATCAGTGTTGTGGACCATAGTTTGGTGCCACAGGAGAGAGATTTTGATGACTGGATTCTTTGCTCTGCTCAAGGTACTCAGCTTGTCCACTGGTCCTGTACTTCTGAATGCTTTTATATTAGTTTCTGAGGGTAATGGAAGTTTCAAATATGAGGGTTATGTATTGGTCATATCACTTTTCATTATAAAGATCATCGAGTCCTTGTCTCAAAGACAGTGGTATTTTCGCAGTAGGCTTGTTGGAATGAAAGTTAGATCACTGCTTACTGCAGCCATTTATAAGAAACTATTGAGGTTATCAAGTGCAGCTAGATTGACACACTCTGGTGGTGAGATAATGAATTATGTGACTGTGGATGCTTACAGAATTGGAGAATTTCCATATTGGTTTCACCAGTCGTGGACAACATGCCTCCAAATATGTATTGCTGTAGTTATACTTTTCCATGCTATTGGAATAGCAACAATATCCTCATTGGTAGTGATAGTTCTCACTGTGCTTTGCAACACTCCACTAGCAAAGTTGATGCATAAGCTTCAGAGCAAACTCATGGTGGCACAAGATGAGCGATTGAAGGCCAGTTCTGAGGCTCTAACAAATATGAAAGTGCTAAAGCTTTATGCATGGGAAACTCATTTCAGAAAGGCTATAGAAAGACTAAGGAATTTGGAACTGAAACTTTTACGCTCAGTCCAACTGAAAAAGGCCTACAACATCTTTCTTTTTTGGAGCTCACCGGTTTTGGTCTCTGCTGCTTCTTTTGGGACATGTTACTTCTTGAATATTCCTCTGCATGCAAATAATCTTTTCACATTTGTGGCCACTATACGTCTTGTGCAGGAGCCAATTACAGCGATCCCAGATGTTATTGGGGTGGTCATTCAAGCAAAAGTGGCATTTGCCAGGATTATTCAATTCCTTAATGCACCTGAATTGCAGAGTGCAAATTTCAGGAATAAAAGTTTTGATGGCAGTAAAGGGTCAATTAAAATCAAATCTGCTGACTTTTCATGGGAAGGTAATGAATCAAAATCAACACTGAGGAACATAAACTTGGAGATCAGACATGGGCAGAAGTTTGCTATTTGTGGAGAAGTTGGCTCAGGCAAATCAACCCTCTTGGCTACAATTCTTGGAGAGGTTCCAATGATAAAAGGAACTATTGAAGTTTATGGAAAGTTTGCATATGTTTCTCAAACAGCATGGATACAGACTGGTACTATACGGGAAAATATTTTGTTTGGATCAGATTTGGATGGTCATAGATATCAAGAAACACTTCGTAGATCTTCACTACTAAAGGATTTGGAGCTGTTTCCCCATGGAGACCTCACACAAATAGGTGAGAGAGGAGTTAACTTAAGTGGAGGTCAAAAGCAGCGAATTCAACTTGCACGTGCTCTTTATCAGAATGCTGATGTATATCTTTTGGATGATCCATTTAGTGCTGTTGATGCACATACTGCAACAAATTTGTTTAATGAATACATCATGGATGGTCTTAAAGAGAAAACTGTTTTACTCGTGACTCATCAAGTTGACTTTCTACCAGCGTTTGATTCTGTTTTGTTGATGTCAAATGGGGAAATCCTAGAATCTGCTCCTTATCATCATTTGTTGTCCACAAGCCGAGAATTCCAAGATCTTGTTAATGCTCACAAGAAAACTGCTGGTTCTAACAAGCCTATGAATGTTTCGTCTTCCAAGAGGCCTTCAATATCTGCTAAAGAGATTACACAAGCTTCCAAGGAGAATCAATTAAAAGAGACATATGGAAATCAGTTAATAAAGGAAGAAGAGAGAGAGATAGGAGACACAGGGTTGAAGCCTTACCTTCAGTATCTGAATCAGACGAAAGGCTATATATACTTCTTTGTGACTTCTCTTTGTCACCTCTTGTTTGTCATTTGCCAGATACTGCAGAACTCATGGATGGCTGCTAATGTTGACAATAACCAAGTTAGCACATTGCGGCTGATTGTTGTTTACTGCATGATTGGGGCTCTTTCTACTGTTTTCTTGCTCATCAGAACTCTACTTCTAGTTGCCTTGGGCATTCAGTCATCAAAATATTTGTTTTTACAGTTAACGAACTCCCTTTTTCGTGCACCGATGTCCTTTTATGACTCTACACCATTGGGAAGAATCCTTAGTAGGGTCTCATCAGATCTAAGCATTATGGATATTGATATCCCTTTTATTATTGCTTATACTGTGGGAGGTACTACAAACTTCTATACCAACCTCATGGTTTTAGCAATTATCACTTGGCAAATCTTGTTTATCGCTGTACCGATGGTTTACATTGCAATACGCTTGCAGAAATATTACTTTTCCACTGCAAAAGAAGTGATGCGGATGAATGGCACAACAAAGTCCTTTGTAGCTAATCATGTAGCTGAAACTAATGCTGGAGTTGTGACAATAAGAGCCTTTGAAGAAGACAATCGTTTCTTTGAGAAGAGTCTTGATCTAATTGACATCAATGCTAGTCCCTTCTTCCATAGTTTTGCCTCAAATGAGTGGCTGATCCAGAGATTGGAAATAGTTAGTGCAGTACTTCTTTCCTCCACAGCACTATGCATGGTTACACTTCCACCAGGGACTTTCAGCTCTGGATTCATTGGCATGGCTCTCTCTTATGGCCTTACACTCAATGCTCAACTAGTATTTTCAATTCAGAGTCAATGCAATCTAGCAAATTACATAATTTCTGTAGAGAGGATAAATCAGTATATGCATATACCGAGTGAGGCCCCAGAAGTAGTAGAAGGAAATCGTCCTCCTTCAGATTGGCCAGTTGCTGGTAAAGTAGAACTAAATGACTTGCAGGTACGATACAGGCCTGATGGACCACTTATACTTCATGGAATCACATGCACATTTGAAGCAGGACACAAGATTGGAATCGTTGGAAGAACAGGCAGTGGAAAGTCCACTCTTATCAGTGCATTATTTCGTCTGGTGGAGGCAGCAGGTGGAAAAATTGTAGTTGATGGCATAGACATATCTTCTATTGGCCTTCATGATTTGAGGTCACGTTTTGGAGTTATACCTCAGGATCCTACTCTTTTTAATGGGACTGTTAGATATAATTTGGACCCTTTATCCCAATACTCTGATCACGAGATATGGGAGGTTCTTGGGAAATGCCAGTTACGAGAAGTTGTCCAAGAGAAATTTCAGGGCCTAAACTCCCCAGTTGTTGAAGATGGATCAAACTGGAGCATGGGACAAAGGCAATTATTTTGTTTGGGGCGTGCACTTTTAAGGAGAAGTAGGATATTGGTGTTGGATGAAGCTACTGCTTCCATTGACAATGCAACTGATTTGATTTTACAGAAAACAATCAGGACTGAGTTTGCAGATTGCACAGTGATTACAGTAGCACACAGGATACCAACTGTGATGGATTGCACTATGGTTCTTTCAATCAGTGATGGAAGGTTGGTGGAGTATGATGAACCAACGAAGTTGATGACGAAAGAAGGATCGCTGTTCAAGCAACTTGTGAAAGAGTACTGGTCTCATTTCCAATCAGCAGAATCACATTGA 4440 0.3973 MEDFWSMACGETDCPGNGGKPPFCYDFKFLKDPSTCTIQFLIICFDVLLMIMLAFILIQKSLFKPFRGQFQVERYSNLQVLSAMTNGFLGLLYVCLGIWVLEEELRKRHTLFPLKLWLAELFQGFRWLFVGLSVSLQLKQLSRSWLWLFSLVTLFVSFIFCVLSMSYAISSRKLIFKEALDFLSLPVSMLLLLCTYKVHKREDTDGEIDEGLYDPLNDHCSEVDPDNHVTPFAKAGFLSKMSFWWLNPLMKRGQEKTLQDEDMPKLRESDRTESCYLSFLERLNREKGKEPLSQSSVLWTIVWCHRREILMTGFFALLKVLSLSTGPVLLNAFILVSEGNGSFKYEGYVLVISLFIIKIIESLSQRQWYFRSRLVGMKVRSLLTAAIYKKLLRLSSAARLTHSGGEIMNYVTVDAYRIGEFPYWFHQSWTTCLQICIAVVILFHAIGIATISSLVVIVLTVLCNTPLAKLMHKLQSKLMVAQDERLKASSEALTNMKVLKLYAWETHFRKAIERLRNLELKLLRSVQLKKAYNIFLFWSSPVLVSAASFGTCYFLNIPLHANNLFTFVATIRLVQEPITAIPDVIGVVIQAKVAFARIIQFLNAPELQSANFRNKSFDGSKGSIKIKSADFSWEGNESKSTLRNINLEIRHGQKFAICGEVGSGKSTLLATILGEVPMIKGTIEVYGKFAYVSQTAWIQTGTIRENILFGSDLDGHRYQETLRRSSLLKDLELFPHGDLTQIGERGVNLSGGQKQRIQLARALYQNADVYLLDDPFSAVDAHTATNLFNEYIMDGLKEKTVLLVTHQVDFLPAFDSVLLMSNGEILESAPYHHLLSTSREFQDLVNAHKKTAGSNKPMNVSSSKRPSISAKEITQASKENQLKETYGNQLIKEEEREIGDTGLKPYLQYLNQTKGYIYFFVTSLCHLLFVICQILQNSWMAANVDNNQVSTLRLIVVYCMIGALSTVFLLIRTLLLVALGIQSSKYLFLQLTNSLFRAPMSFYDSTPLGRILSRVSSDLSIMDIDIPFIIAYTVGGTTNFYTNLMVLAIITWQILFIAVPMVYIAIRLQKYYFSTAKEVMRMNGTTKSFVANHVAETNAGVVTIRAFEEDNRFFEKSLDLIDINASPFFHSFASNEWLIQRLEIVSAVLLSSTALCMVTLPPGTFSSGFIGMALSYGLTLNAQLVFSIQSQCNLANYIISVERINQYMHIPSEAPEVVEGNRPPSDWPVAGKVELNDLQVRYRPDGPLILHGITCTFEAGHKIGIVGRTGSGKSTLISALFRLVEAAGGKIVVDGIDISSIGLHDLRSRFGVIPQDPTLFNGTVRYNLDPLSQYSDHEIWEVLGKCQLREVVQEKFQGLNSPVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDLILQKTIRTEFADCTVITVAHRIPTVMDCTMVLSISDGRLVEYDEPTKLMTKEGSLFKQLVKEYWSHFQSAESH 1479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g01965 1479 Pfam ABC transporter transmembrane region 310 576 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Viun4g01965 1479 Pfam ABC transporter transmembrane region 917 1160 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Viun4g01965 1479 CDD ABC_6TM_ABCC_D2 915 1208 IPR044726 GO:0140359
Viun4g01965 1479 SUPERFAMILY ABC transporter transmembrane region 298 598 IPR036640 GO:0005524|GO:0016020
Viun4g01965 1479 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1224 1465 IPR027417 -
Viun4g01965 1479 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 232 1467 - -
Viun4g01965 1479 FunFam ABC transporter C family member 10 607 860 - -
Viun4g01965 1479 CDD ABCC_MRP_domain1 624 824 - -
Viun4g01965 1479 FunFam ABC transporter C family member 5 882 1214 - -
Viun4g01965 1479 CDD ABCC_MRP_domain2 1231 1451 - -
Viun4g01965 1479 Gene3D ABC transporter type 1, transmembrane domain 881 1214 IPR036640 GO:0005524|GO:0016020
Viun4g01965 1479 Gene3D ABC transporter type 1, transmembrane domain 281 607 IPR036640 GO:0005524|GO:0016020
Viun4g01965 1479 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 626 847 IPR003439 GO:0005524
Viun4g01965 1479 Pfam ABC transporter 642 776 IPR003439 GO:0005524
Viun4g01965 1479 CDD ABC_6TM_ABCC_D1 312 598 IPR044746 GO:0140359
Viun4g01965 1479 Pfam ABC transporter 1250 1398 IPR003439 GO:0005524
Viun4g01965 1479 Gene3D - 622 855 IPR027417 -
Viun4g01965 1479 SUPERFAMILY ABC transporter transmembrane region 915 1213 IPR036640 GO:0005524|GO:0016020
Viun4g01965 1479 ProSitePatterns ABC transporters family signature. 749 763 IPR017871 GO:0005524|GO:0016887
Viun4g01965 1479 FunFam ABC transporter C family member 10 293 606 - -
Viun4g01965 1479 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 620 847 IPR027417 -
Viun4g01965 1479 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 310 590 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Viun4g01965 1479 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1233 1467 IPR003439 GO:0005524
Viun4g01965 1479 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 920 1196 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Viun4g01965 1479 FunFam ABC transporter C family member 3 1216 1468 - -
Viun4g01965 1479 Gene3D - 1217 1468 IPR027417 -
Viun4g01965 1479 SMART AAA_5 651 824 IPR003593 GO:0016887
Viun4g01965 1479 SMART AAA_5 1259 1451 IPR003593 GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g01965 Viun-Chr4 34811146 34817307 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun4g01965 597 877 Calmodulin-binding Proteins AT2G36910 29.801 3.64e-24 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g01965 K05666 - gmx:100787314 2621.65