Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g01964 ATGGCGATTCAAAATTCCCCTGCATTCACATATGATGTGTTCCTCAGCTTTAGAGGGGAAGACACGCGTCATGGTTTCACCGGCAATCTCTACAAAGCTCTGTGTGACAGAGGAATTCACACTTTCATCGATGATGAGGATCTTCAGAGTGGAGAGGAAATCACACCAGCACTTGCGAAGGCAATTGAAGACTCTAGGATTGCCATCGTTGTGCTCTCTAAGAACTATGCTTCTTCCTCCTTCTGCTTGGATGAACTTGTAGTCATCCTTGACTGCAAGAATAAAGGACTACTTGTTATACCAGTATTTTATAAGGTGGATCCTTCAGACGTGAGACACCAGAAAGAGAGTTATGGAGAAGCATTGACAAAGCGTCAGAGAAGGTTTGAAGATGTGGAGAAGGTGCAGAAATGGAAGATGGCTCTGCGTCAAGTGGCTGATTTGTCTGGCTATCATTTCAAAGACTGTGATGGGTACGAATACAAGTTTATTGGGAGTGTTGTGGACCAGGTCTGCCAAAAGATTAATCCTGCTCGTTTACATGCGGATTACACTGTTGGACTAGGCCCACAAGTGCTTCGACTAAGGAAGCTTCTAAATGTTGAATGTGGTGATGGATTCCACATGATAGGGATCCATGGAATGGGCGGTGTTGGAAAAACAACACTCGCTTTAGCACTTTATAATTTGATTGCTGGCTGTTTTGATGGTTCTTGTTTTCTTGGAAACGTGCGAGAGAAATCAAACAAGGATGGGCTGGAACACCTCCAAAGCATTCTTCTCTCAAAAATACTTGGAGAGAAGGACATCAAGTTAGCAAGTAAGCACGAAGGAATTTCAATGATACAACGAAGGTTGCAGCGAAAGAAGGTTCTCTTGATTCTTGATGATGTTGACACGTGCGAGCAGTTACAGGCACTGGCTGGAAGCCCAGATTGGTTTGGTCCTGGCAGCAGGGTCGTCATCACAACTCGAGATACACAACCGCTTGCATCTCATCATGTCAAAGAAACATATGAGGTCAATCCATTGAACAAAGATGATGCTCTTCAGTTGCTTACAAGGAAAGCTTTCAAAACGGAACAGGTTGATGCAAGTTACGTGGAGGTCTTGAATCATGCAGTAACTTATGCTTCTGGCCTTCCATTGGCTTTGGAAGTAATAGGTTCTAACTTGGCTGGAAAAAGTGTAGAAAAATGGAAATCTGCTATCAATCAATATAAAAGAATTCCTAACAATCAAATCTTAGAGATACTTAAAGTAAGCTTTGAGGGTCTGGAGAGAGAAGAGAAGAGTGTTTTTCTTGACATAGCTTGTTGCTTCAAAGGATATGCATTAAGAGAGGTGGAAGATATTCTTGGTGCTATTTATGATGACTGCATGAAACATCATATTAGTGTGTTGGTTGACAAATCTCTCATAAAGATTGGTTGGTGGAGTACAGTTGAAATACACGACCTGATTGAGGAGATGGGTAGACAAATTGACCAGCAAGAATCACCAGAAGGGTTAGGGAAGCGCAGGAGAATATCGTTACCTAAAGTTATAATTCAAGTTTTAAAGGAGAACACAGAAACTAGCATGATTGAGATTCTATGTCTTGATATCTCGATATATAAGGAAGTAGAAAGACTGGATTGGAATGGAAACGCCTTTGGAAATATGAAAAACCTTAAAGCACTTATTATTAGAAATTGCAAAATTTCTGGAGGTCCCAATTGTTTTCCAGAAAGTTTGAGAGTATTGGAATGGCATGGATACCCTTCAAATTGTTTTCCATCGAATTTTGATCCGAACAAACTTTTGATATGCAAGTTACCTGATAGTGATTTTACGTCATTTAAATTCCCCGGCTCATCAAAGAAGTTCGAGAATCTAACCGAATTGAATTTTGACTACTGCAATCTTTTAACACAGATACCTAACGTATCTCATCTCCCAAATTTGGAAAAGCTTTCTTTTAAAGAATGTGCGAGTTTAATTGCAGTAGACGACTCAGTTGGTTTTCTGACTAAACTTAAAATATTGATTGCGGAAGAGTGCGCGGAGCTTAAGAGATTTCCACCTCTCAACTTGCCTTCTCTTGAAGAACTAGAACTTTCAGACTGTTTTAGTCTTGAGAATTTTCCAGAAATCTTAGGAAAGACGGGAAAAATAAAGAAACTTCGTTTGGTTAGACTTCCCATGATAAAAGAGTTGCCAGTTTCATTTCAAAATCTTACAGGACTCCGATACTTAGAAATGACAGGATGTCATTTTCTTCGGTTAAATAGCAATATCTTGACGTCTGCATTGACCCATTTTAGAGTTTTTGGATGCAAGGAGTGGAAATGGATAAATTCAAAAGATGGCGAAGAAGTGGGCTCAACGGTATCTTCAAATCTACGTTCGTTTGGGGTTATGTATTGCGACCTGAATGATGATATTTTTTCAGCAGATTTCACGCAGTTGACCACAGTGACGTCTTTAAACCTATCGGGAACTAATATCACATTCCTTCCTGAGTGCATCAAAGAATTTCAGCACCTGGATGATCTTGATGTGAGTTATTGCAAGTATCTACAGGAAATTAGAGGGATTCCACCAAAGTTGAGAAAGTTCAGGGCGAAAGACTGTAGATCATTGACTTCCTCGAGTTCAAGCATGTTCTTAAATCAGCAACTTCACGAGGCTAGAGAGACTGATTTTATCTTTCCAGGAGGAAGTATCCCAAGATGGTTCGAAAAACAAAGTCGGGGACCTTCAATTTGTTTCTGGTTTCGTAATAAATTTCCCGCAAAAGTTGTTTGTCTTCTTATTTTATCTTTACAGCAGCCTGAATATGCAGAACTAGTTAAACCAATGGTGTTAATCAATGGCCTACTTCGAGGCTCTTATGATTATAGTTATTATTTGAAGAGAGAAGAGGGGATTGTGGAATTGGATCATGTGTACCTCTTTGATCTACGAGTGTTACCTTTCCAAGATGATCTGATGGAAATGCCTTTAGAAGAAGAGTGGAAGCATGTGGAGGTTACGTATCAAGGTATGTTTGATACCTCACTCATTAAAGGAATGGGAATCCATGTAGTCAAAACGGAAAGGAGGAGCATGGAGGACATAAGATACGATTATCCTTTATAG 3123 0.399 MAIQNSPAFTYDVFLSFRGEDTRHGFTGNLYKALCDRGIHTFIDDEDLQSGEEITPALAKAIEDSRIAIVVLSKNYASSSFCLDELVVILDCKNKGLLVIPVFYKVDPSDVRHQKESYGEALTKRQRRFEDVEKVQKWKMALRQVADLSGYHFKDCDGYEYKFIGSVVDQVCQKINPARLHADYTVGLGPQVLRLRKLLNVECGDGFHMIGIHGMGGVGKTTLALALYNLIAGCFDGSCFLGNVREKSNKDGLEHLQSILLSKILGEKDIKLASKHEGISMIQRRLQRKKVLLILDDVDTCEQLQALAGSPDWFGPGSRVVITTRDTQPLASHHVKETYEVNPLNKDDALQLLTRKAFKTEQVDASYVEVLNHAVTYASGLPLALEVIGSNLAGKSVEKWKSAINQYKRIPNNQILEILKVSFEGLEREEKSVFLDIACCFKGYALREVEDILGAIYDDCMKHHISVLVDKSLIKIGWWSTVEIHDLIEEMGRQIDQQESPEGLGKRRRISLPKVIIQVLKENTETSMIEILCLDISIYKEVERLDWNGNAFGNMKNLKALIIRNCKISGGPNCFPESLRVLEWHGYPSNCFPSNFDPNKLLICKLPDSDFTSFKFPGSSKKFENLTELNFDYCNLLTQIPNVSHLPNLEKLSFKECASLIAVDDSVGFLTKLKILIAEECAELKRFPPLNLPSLEELELSDCFSLENFPEILGKTGKIKKLRLVRLPMIKELPVSFQNLTGLRYLEMTGCHFLRLNSNILTSALTHFRVFGCKEWKWINSKDGEEVGSTVSSNLRSFGVMYCDLNDDIFSADFTQLTTVTSLNLSGTNITFLPECIKEFQHLDDLDVSYCKYLQEIRGIPPKLRKFRAKDCRSLTSSSSSMFLNQQLHEARETDFIFPGGSIPRWFEKQSRGPSICFWFRNKFPAKVVCLLILSLQQPEYAELVKPMVLINGLLRGSYDYSYYLKREEGIVELDHVYLFDLRVLPFQDDLMEMPLEEEWKHVEVTYQGMFDTSLIKGMGIHVVKTERRSMEDIRYDYPL 1040
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g01964 1040 Gene3D - 182 338 IPR027417 -
Viun4g01964 1040 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 11 775 IPR044974 GO:0006952
Viun4g01964 1040 SUPERFAMILY Toll/Interleukin receptor TIR domain 7 151 IPR035897 -
Viun4g01964 1040 Gene3D Ribonuclease Inhibitor 760 895 IPR032675 -
Viun4g01964 1040 Gene3D Ribonuclease Inhibitor 527 690 IPR032675 -
Viun4g01964 1040 Gene3D Ribonuclease Inhibitor 691 759 IPR032675 -
Viun4g01964 1040 SMART AAA_5 206 364 IPR003593 GO:0016887
Viun4g01964 1040 SMART till_3 10 148 IPR000157 GO:0007165
Viun4g01964 1040 Pfam TIR domain 11 177 IPR000157 GO:0007165
Viun4g01964 1040 PRINTS Disease resistance protein signature 285 299 - -
Viun4g01964 1040 PRINTS Disease resistance protein signature 209 224 - -
Viun4g01964 1040 PRINTS Disease resistance protein signature 378 392 - -
Viun4g01964 1040 PRINTS Disease resistance protein signature 690 706 - -
Viun4g01964 1040 ProSiteProfiles Leucine-rich repeat profile. 625 647 IPR001611 GO:0005515
Viun4g01964 1040 Gene3D - 5 181 IPR035897 -
Viun4g01964 1040 FunFam Disease resistance protein (TIR-NBS-LRR class) 8 177 - -
Viun4g01964 1040 SUPERFAMILY "Winged helix" DNA-binding domain 414 520 IPR036390 -
Viun4g01964 1040 SUPERFAMILY L domain-like 546 885 - -
Viun4g01964 1040 Gene3D - 343 427 IPR042197 -
Viun4g01964 1040 Pfam NB-ARC domain 196 409 IPR002182 GO:0043531
Viun4g01964 1040 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 182 437 IPR027417 -
Viun4g01964 1040 ProSiteProfiles TIR domain profile. 9 175 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g01964 Viun-Chr4 34780581 34784834 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun4g01964 6 755 WRKY Transcription Factor Family AT4G12020 28.534 2.41e-70 255
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g01964 - - var:108344036 1259.59