Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g01962 ATGACAGGGTTTAAGCAGCAAAGAGCACATACAACGATGAAGGAATTTTGGAGCATGTTTTGTGCAGAAGCTGATTGTCCTGGGACTGGAGGAAAACAACCATTTTGTTTTGATTTGAAGACTTTGAAAGATCCTTCTTCATGCTTCAACCAGTTCTTGATCTTTTGCTTTGATGTGTCAGTGCTGGTCATGCTGGCATTCATTCTGATCCAGAAGTATTTGTTCAGACCATTTCAGGGTATGTTTCAGGTGGAAAGATATTCAAACTTGCAGCTAATTTCTTCCATAATCAATGCATCTCTGGGATTGTTGTATTTGTGCTTAGGAATTTGGGTTTTAGAGGAAAACTTAAGGAAGAGTCACACGGTTCTTCCACTTAGTGGTTGGCTGCTTGAACTCTTTGAAGGATTCAGATGGTTGATAGTAGGATTAAGTGTAAGTCTTAAGTTGAAACAACTTCCAAGATCATGGTTGTGGTTGTTTTCTCTTGTTACACTATTTCTTTCGAGTTTTCTCTGTGTTTTATCTATGTCTTATGCAATTAGTAACAGAGAACTGACCTTCAAGGAAGCTTTAGATGTTCTATCTTTTCCAGGAGCAGTTTTACTACTCTTGTGCACTTATAAAACACCTAAATGTGAAGACACTGCTACAAGTATTGATGAAGACTTTTATGATTCCTTAAACAACGACTTTCATGAAGTTGATCCTTATAACTACGTAACCCCATTTGCTAAAGCTGGATTCCTCAGTAGAATGTCGTTTTGGTGGTTGAATCCATTGATGAAAATTGGTCAAGAGAAAACACTTCAGGATGAGGATATCCCAAAGTTGCCAGAATTGGATCGAGCAGAATTTTGTTATTTGTCGTTTATAGAACAATTGAACACGCAAAAGGGAAAAGAATCATTGTCACAATCATCAATTTTGTGGGCAATAGTTTTTTGCCACTGGAAAGATATTTTGATGTCAGGATTGTTTGCATTGCTCAAGGTACTTAGTGTATGTACTGGTCCTGTACTTTTGAATGCTTTTATATCGATTGCTGAGGGTAATGGCAGTTTCAAATATGAGGGTTATGTATTGGTCTTAACTCTTTTCATTACAAAAATCGCAGAGTCCCTATCACAAAGGCAATGGTATTTTCGCACTAGGCTTGTTGGGATGAAAATTAGGTCAATGCTTACAGCTTCCATTTATAGAAAAATATTGAGGTTGTCTGGTGCAGCTAGATTGACACACTCTAGTGGTGAGATAATGAATTATGTGACTGTGGATGCTTACAGAATTGGAGAATTCCCATTTTGGTTTCACCAGACATGGACAACAAGCGTACAACTATGTATTGCACTTATAATACTTTTTCGTGCTATTGGCCTAGCAACAATTGCCTCATTGGTGGTGATAGTTCTCACTGTGCTTTGCAATACTCCACTAGCAAAGATGCAGCATAAGTTTCAGAGTAAACTCGTGGTGGCACAAGATGAGAGATTGAAGGTGAGTTCTGAGGCCCTTGTGAATATGAAAGTGCTGAAGCTATATGCGTGGGAAACGCATTTTAAAAATGCTATTGAAAGATTAAGAAACATTGAACTGAAATTGTTGAGTGCAGTGCAACTGAGAAAGGCTTACAACATAATTTTATTTTGGATCTCACCTGTTTTGGTGTCTGCTGCTTCTTTTGGGGCATGCTACTTTTTGAATGTTCCTTTACATGCAAACAATGTTTTCACTTTTGTGGCAACTTTACGCCTGGTGCAAGAACCAATTACAGCCATCCCTGATGTTGTTGGGGTGGTCATTCAAGCAAAAGTTGCATTTTCCAGGATTGTTAATTTCCTTGAGGCAACTGAATTACAGAGTGCAAAATTCAAGCATAGGTGTTTTGATGATAGTATCAAGGGCTCAATTTCGATCAAATCTGCTGACTTTTCATGGGAAGGTAATGTATCAAAGTCAACACTGAGGAACATAAACTTGGAGATTAGACATGGGCAGAAGTTGGCAATTTGTGGAGAAGTTGGCTCAGGAAAATCAACCCTCTTAACTACAATTCTCGGTGAAGTTCCTCTGACAAAGGGAACTATAGAAGTTTATGGAAAGTTTGCATATGTTTCTCAAACAGCATGGATACAAACAGGGACAATACGGGAAAATATTTTGTTTGGATCGGATTTGGATGCTCATAGATATCAAGAAACACTTCGTAGATCTTCACTGCTAAAGGATTTGGAGCTGTTTCCTCATGGAGACCTCACAGAAATAGGTGAGAGAGGAGTTAACTTGAGTGGAGGTCAAAAGCAGCGAATTCAACTTGCACGTGCTCTTTATCAGAATGCTGATGTATATCTTTTGGATGATCCATTTAGTGCTGTTGATGCACATACTGCCACAAATTTGTTTAATGTAATGTCATCTTCCTTACTTCAAATTTTACATTTATGTGGTATGAGTCATTCCTTACTCAAAAAAGGCTTTGAAATTTGGCAGGAATACATCATGGATGGTCTTAAAGAGAAAACTGTTTTACTCGTAACTCATCAAGTCGACTTTCTACCAGCCTTTGATTCTGTTATGTTGATGTCAAATGGGAAAATCCTAGAAGTTGCTCCTTATCATCATTTGTTGACTTCAAGCCGAGAATTCCAGAATCTTGTTAATGCTCACAATGAAACTGCAGGTTCTGACAACCCTTTGGATGTTTCTTCTTCCCAGAGAGATTCAACTTCTGCCAGAGAGATTACACAAGCTTTCATGGAGAAGCAGTTAAAAGCAACAAATGAAAATCAGTTAATAAAGGAAGAAGAGAGAGAGATAGGAAACACAGGGTTCAAACCGTACTTGCAATACTTGAATCAGAAGAAAGGTTATGCATACTTCTTTATGGCTTCTTTTTGTCACCTCATGTTTGTGATTCTCCAGATACTGCAAAACTCATGGATGGCTGCAAATGTTGACAATTCCCAAGTCAGCACACTGCAGTTGATTGTAGTTTACTTCTTGATTGGGGTTGCTTCTATAATTTTCTTGTTGATCAGAACTCTGCTTGTTGTTGCCTTTGGTATTCAATCATCAACATATTTATTTGTACAGTTAATTAACTCCCTTTTTCGTGCACCAATGTCCTTTTATGATTGTACACCATTGGGAAGGATACTTAGCAGGGTCTCATCAGATCTTAGCATTATGGATCTTGATATACCTTTTATGCTAAGTTTCACTACGGTAGGTGTTATATACTTATGTTCTAATCTCACAGTTCTAGCCATTGTCTCTTGGCAAGTCTTGGTTGTCTCCTTACCAATGATTTATGCTGCAATTCGCTTGCAGAAATATTATTTTTCCACTGCAAAAGAATTGATGCGCGTGAATGGCACAACAAAATCATTTGTAGCTAATCATATAGCTGAAACAACTGCTGGAGCTGTGACAATAAGAGCTTTTGAGGAAGAAGATCGTTTTTTCAAGAAGAATCTTGATCTAATTGATATCAATGCCAGTCCCTTCTTTCACAGTTTTGCCTCAAATGAGTGGCTGATCCAAAGATTAGAAGTAATCAGTGCATTACTTCTTACCTCTGCAGCTCTATGCATGGTTCTGCTTCCACCAGGAACATTCAGCTCTGGATTGGTTGGCATGGTTCTCTCCTATGGCCTTACCTTAAACGCTTCCTTAGTATTTTTAATTCAAAATCAATGCAGTCTAGAAAATTACATAGTATCCGTAGAGAGGATAAATCAATATATGCATATACCAAGTGAGGCCCCAGAAGTAATAGCAGGAAATCGTCCTCCTTCAAATTGGCCAGTTGCTGGTAAAGTAGAACTAAATGACTTGCAGATACGATACAGGCCATATGGACCACTTATACTTCATGGAATCACATGCACATTCGAAGCAGGACACAAGATTGGAATTGTTGGAAGAACAGGCAGTGGAAAGTCCACTCTTATCAGTGCATTATTTCGTCTGGTGGAGGCAGCTGGTGGAAAAATTGTAGTTGATGGCATAGACATATCTTCTATTGGCCTTCATGATTTGAGGTCACGTTTTGGTGTTATACCTCAGGATCCTACCCTTTTTAACGGAACTGTTAGATATAATTTAGACCCTTTATCTCAATACTCTGATCGAGAAATTTGGGAGGTTCTTGGGAAGTGTCAGCTGCGAGAAGTTGTACAAGAGAAAGAAGAGGGACTAAACTCCTCAGTTGTGGAAGATGGATCAAACTGGAGCATGGGACAAAGGCAATTATTTTGTTTGGGGCGTGCGCTGTTAAGGAGAAGTAGGATATTGGTGTTGGATGAAGCAACTGCATCAATTGACAACGCAACTGATTTGATTCTGCAGAAAACCATTAGAACTGAGTTTGCAGATTGTACAGTGATCACAGTAGCACACAGAATACCAACCGTGATGGATTGCAGTATGGTTCTTTCAATTAGTGATGGAAAATTGGTGGAGTATGATGAACCAATGAACTTGATGAACAAAGAAGGATCGCTATTCAAGCAGCTTGTTAAGGAGTACTGGTCTCATTTTCATTCTGCAGAATCATATTGA 4563 0.3861 MTGFKQQRAHTTMKEFWSMFCAEADCPGTGGKQPFCFDLKTLKDPSSCFNQFLIFCFDVSVLVMLAFILIQKYLFRPFQGMFQVERYSNLQLISSIINASLGLLYLCLGIWVLEENLRKSHTVLPLSGWLLELFEGFRWLIVGLSVSLKLKQLPRSWLWLFSLVTLFLSSFLCVLSMSYAISNRELTFKEALDVLSFPGAVLLLLCTYKTPKCEDTATSIDEDFYDSLNNDFHEVDPYNYVTPFAKAGFLSRMSFWWLNPLMKIGQEKTLQDEDIPKLPELDRAEFCYLSFIEQLNTQKGKESLSQSSILWAIVFCHWKDILMSGLFALLKVLSVCTGPVLLNAFISIAEGNGSFKYEGYVLVLTLFITKIAESLSQRQWYFRTRLVGMKIRSMLTASIYRKILRLSGAARLTHSSGEIMNYVTVDAYRIGEFPFWFHQTWTTSVQLCIALIILFRAIGLATIASLVVIVLTVLCNTPLAKMQHKFQSKLVVAQDERLKVSSEALVNMKVLKLYAWETHFKNAIERLRNIELKLLSAVQLRKAYNIILFWISPVLVSAASFGACYFLNVPLHANNVFTFVATLRLVQEPITAIPDVVGVVIQAKVAFSRIVNFLEATELQSAKFKHRCFDDSIKGSISIKSADFSWEGNVSKSTLRNINLEIRHGQKLAICGEVGSGKSTLLTTILGEVPLTKGTIEVYGKFAYVSQTAWIQTGTIRENILFGSDLDAHRYQETLRRSSLLKDLELFPHGDLTEIGERGVNLSGGQKQRIQLARALYQNADVYLLDDPFSAVDAHTATNLFNVMSSSLLQILHLCGMSHSLLKKGFEIWQEYIMDGLKEKTVLLVTHQVDFLPAFDSVMLMSNGKILEVAPYHHLLTSSREFQNLVNAHNETAGSDNPLDVSSSQRDSTSAREITQAFMEKQLKATNENQLIKEEEREIGNTGFKPYLQYLNQKKGYAYFFMASFCHLMFVILQILQNSWMAANVDNSQVSTLQLIVVYFLIGVASIIFLLIRTLLVVAFGIQSSTYLFVQLINSLFRAPMSFYDCTPLGRILSRVSSDLSIMDLDIPFMLSFTTVGVIYLCSNLTVLAIVSWQVLVVSLPMIYAAIRLQKYYFSTAKELMRVNGTTKSFVANHIAETTAGAVTIRAFEEEDRFFKKNLDLIDINASPFFHSFASNEWLIQRLEVISALLLTSAALCMVLLPPGTFSSGLVGMVLSYGLTLNASLVFLIQNQCSLENYIVSVERINQYMHIPSEAPEVIAGNRPPSNWPVAGKVELNDLQIRYRPYGPLILHGITCTFEAGHKIGIVGRTGSGKSTLISALFRLVEAAGGKIVVDGIDISSIGLHDLRSRFGVIPQDPTLFNGTVRYNLDPLSQYSDREIWEVLGKCQLREVVQEKEEGLNSSVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDLILQKTIRTEFADCTVITVAHRIPTVMDCSMVLSISDGKLVEYDEPMNLMNKEGSLFKQLVKEYWSHFHSAESY 1520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g01962 1520 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 632 888 IPR027417 -
Viun4g01962 1520 CDD ABC_6TM_ABCC_D1 324 610 IPR044746 GO:0140359
Viun4g01962 1520 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1264 1506 IPR027417 -
Viun4g01962 1520 CDD ABCC_MRP_domain1 637 865 - -
Viun4g01962 1520 Gene3D - 632 894 IPR027417 -
Viun4g01962 1520 Pfam ABC transporter 655 789 IPR003439 GO:0005524
Viun4g01962 1520 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 968 1237 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Viun4g01962 1520 FunFam ABC transporter C family member 3 1257 1509 - -
Viun4g01962 1520 SUPERFAMILY ABC transporter transmembrane region 310 610 IPR036640 GO:0005524|GO:0016020
Viun4g01962 1520 Pfam ABC transporter 1291 1439 IPR003439 GO:0005524
Viun4g01962 1520 CDD ABC_6TM_ABCC_D2 960 1249 IPR044726 GO:0140359
Viun4g01962 1520 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 322 602 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Viun4g01962 1520 FunFam ABC transporter C family member 10 305 618 - -
Viun4g01962 1520 Gene3D ABC transporter type 1, transmembrane domain 921 1255 IPR036640 GO:0005524|GO:0016020
Viun4g01962 1520 SMART AAA_5 1300 1492 IPR003593 GO:0016887
Viun4g01962 1520 SMART AAA_5 664 865 IPR003593 GO:0016887
Viun4g01962 1520 ProSitePatterns ABC transporters family signature. 762 776 IPR017871 GO:0005524|GO:0016887
Viun4g01962 1520 FunFam Multidrug resistance-associated protein 4 622 821 - -
Viun4g01962 1520 Gene3D ABC transporter type 1, transmembrane domain 304 620 IPR036640 GO:0005524|GO:0016020
Viun4g01962 1520 CDD ABCC_MRP_domain2 1272 1492 - -
Viun4g01962 1520 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 244 1508 - -
Viun4g01962 1520 Gene3D - 1258 1510 IPR027417 -
Viun4g01962 1520 SUPERFAMILY ABC transporter transmembrane region 948 1254 IPR036640 GO:0005524|GO:0016020
Viun4g01962 1520 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1274 1508 IPR003439 GO:0005524
Viun4g01962 1520 FunFam ABC transporter C family member 5 923 1255 - -
Viun4g01962 1520 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 639 888 IPR003439 GO:0005524
Viun4g01962 1520 Pfam ABC transporter transmembrane region 322 587 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Viun4g01962 1520 Pfam ABC transporter transmembrane region 959 1223 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g01962 Viun-Chr4 34768209 34774077 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun4g01962 588 876 Calmodulin-binding Proteins AT2G36910 26.797 1.06e-22 104
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g01962 K05666 - gmx:100787314 2461.41