Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g01959 ATGAAGGAATTTTGGAGCATGTTTTGTGCAGAAGCTGATTGTCCTGGGACTGGAGGAAAACAACCATTTTGTTTTGATTTGAAGACTTTGAAAGATCCTTCTTCATGCTTCAACCAGTTCTTGATCTTTTGCTTTGATGTGTCAGTGCTGGTCATGCTGGCATTCATTCTGATCCAGAAGTATTTGTTCAGACCATTTCAGGGTATGTTTCAGGTGGAAAGATATTCAAACTTGCAGCTAATTTCTTCCATAATCAATGCATCTCTGGGATTGTTGTATTTGTGCTTAGGAATTTGGGTTTTAGAGGAAAACTTAAGGAAGAGTCACACGGTTCTTCCACTTAGTGGTTGGCTGCTTGAACTCTTTGAAGGATTCAGATGGTTGATAGTAGGATTAAGTGTAAGTCTTAAGTTGAAACAACTTCCAAGATCATGGTTGTGGTTGTTTTCTCTTGTTACACTATTTCTTTCGAGTTTTCTCTGTGTTTTATCTATGTCTTATGCAATTAGTAACAGAGAACTGACCTTCAAGGAAGCTTTAGATGTTCTATCTTTTCCAGGAGCAGTTTTACTACTCTTGTGCACTTATAAAACACCTAAATGTGAAGACACTGCTACAAGTATTGATGAAGACTTTTATGATTCCTTAAACAACGACTTTCATGAAGTTGATCCTTATAACTACGTAACCCCATTTGCTAAAGCTGGATTCCTCAGTAGAATGTCGTTTTGGTGGTTGAATCCATTGATGAAAATTGGTCAAGAGAAAACACTTCAGGATGAGGATATCCCAAAGTTGCCAGAATTGGATCGAGCAGAATTTTGTTATTTGTCGTTTATAGAACAATTGAACACGCAAAAGGGAAAAGAATCATTGTCACAATCATCAATTTTGTGGGCAATAGTTTTTTGCCACTGGAAAGATATTTTGATGTCAGGATTGTTTGCATTGCTCAAGGTACTTAGTGTATGTACTGGTCCTGTACTTTTGAATGCTTTTATATCGATTGCTGAGGGTAATGGCAGTTTCAAATATGAGGGTTATGTATTGGTCTTAACTCTTTTCATTACAAAAATCGCAGAGTCCCTATCACAAAGGCAATGGTATTTTCGCACTAGGCTTGTTGGGATGAAAATTAGGTCAATGCTTACAGCTTCCATTTATAGAAAAATATTGAGGTTGTCTGGTGCAGCTAGATTGACACACTCTAGTGGTGAGATAATGAATTATGTGACTGTGGATGCTTACAGAATTGGAGAATTCCCATTTTGGTTTCACCAGACATGGACAACAAGCGTACAACTATGTATTGCACTTATAATACTTTTTCGTGCTATTGGCCTAGCAACAATTGCCTCATTGGTGGTGATAGTTCTCACTGTGCTTTGCAATACTCCACTAGCAAAGATGCAGCATAAGTTTCAGAGTAAACTCGTGGTGGCACAAGATGAGAGATTGAAGGTGAGTTCTGAGGCCCTTGTGAATATGAAAGTGCTGAAGCTATATGCGTGGGAAACGCATTTTAAAAATGCTATTGAAAGATTAAGAAACATTGAACTGAAATTGTTGAGTGCAGTGCAACTGAGAAAGGCTTACAACATAATTTTATTTTGGATCTCACCTGTTTTGGTGTCTGCTGCTTCTTTTGGGGCATGCTACTTTTTGAATGTTCCTTTACATGCAAACAATGTTTTCACTTTTGTGGCAACTTTACGCCTGGTGCAAGAACCAATTACAGCCATCCCTGATGTTGTTGGGGTGGTCATTCAAGCAAAAGTTGCATTTTCCAGGATTGTTAATTTCCTTGAGGCAACTGAATTACAGAGTGCAAAATTCAAGCATAGGTGTTTTGATGATAGTATCAAGGGCTCAATTTCGATCAAATCTGCTGACTTTTCATGGGAAGGTAATGTATCAAAGTCAACACTGAGGAACATAAACTTGGAGATTAGACATGGGCAGAAGTTGGCAATTTGTGGAGAAGTTGGCTCAGGAAAATCAACCCTCTTAACTACAATTCTCGGTGAAGTTCCTCTGACAAAGGGAACTATAGAAGTTTATGGAAAGTTTGCATATGTTTCTCAAACAGCATGGATACAAACAGGGACAATACGGGAAAATATTTTGTTTGGATCGGATTTGGATGCTCATAGATATCAAGAAACACTTCGTAGATCTTCACTGCTAAAGGATTTGGAGCTGTTTCCTCATGGAGACCTCACAGAAATAGGTGAGAGAGGAGTTAACTTGAGTGGAGGTCAAAAGCAGCGAATTCAACTTGCACGTGCTCTTTATCAGAATGCTGATGTATATCTTTTGGATGATCCATTTAGTGCTGTTGATGCACATACTGCCACAAATTTGTTTAATGTAATGTCATCTTCCTTACTTCAAATTTTACATTTATGTGGTATGAGTCATTCCTTACTCAAAAAAGGCTTTGAAATTTGGCAGGAATACATCATGGATGGTCTTAAAGAGAAAACTGTTTTACTCGTAACTCATCAAGTCGACTTTCTACCAGCCTTTGATTCTGTTATGTTGATGTCAAATGGGAAAATCCTAGAAGTTGCTCCTTATCATCATTTGTTGACTTCAAGCCGAGAATTCCAGAATCTTGTTAATGCTCACAATGAAACTGCAGGTTCTGACAACCCTTTGGATGTTTCTTCTTCCCAGAGAGATTCAACTTCTGCCAGAGAGATTACACAAGCTTTCATGGAGAAGCAGTTAAAAGCAACAAATGAAAATCAGTTAATAAAGGAAGAAGAGAGAGAGATAGGAAACACAGGGTTCAAACCGTACTTGCAATACTTGAATCAGAAGAAAGGTTATGCATACTTCTTTATGGCTTCTTTTTGTCACCTCATGTTTGTGATTCTCCAGATACTGCAAAACTCATGGATGGCTGCAAATGTTGACAATTCCCAAGTCAGCACACTGCAGTTGATTGTAGTTTACTTCTTGATTGGGGTTGCTTCTATAATTTTCTTGTTGATCAGAACTCTGCTTGTTGTTGCCTTTGGTATTCAATCATCAACATATTTATTTGTACAGTTAATTAACTCCCTTTTTCGTGCACCAATGTCCTTTTATGATTGTACACCATTGGGAAGGATACTTAGCAGGGTCTCATCAGATCTTAGCATTATGGATCTTGATATACCTTTTATGCTAAGTTTCACTACGGTAGGTGTTATATACTTATGTTCTAATCTCACAGTTCTAGCCATTGTCTCTTGGCAAGTCTTGGTTGTCTCCTTACCAATGATTTATGCTGCAATTCGCTTGCAGAAATATTATTTTTCCACTGCAAAAGAATTGATGCGCGTGAATGGCACAACAAAATCATTTGTAGCTAATCATATAGCTGAAACAACTGCTGGAGCTGTGACAATAAGAGCTTTTGAGGAAGAAGATCGTTTTTTCAAGAAGAATCTTGATCTAATTGATATCAATGCCAGTCCCTTCTTTCACAGTTTTGCCTCAAATGAGTGGCTGATCCAAAGATTAGAAGTAATCAGTGCATTACTTCTTACCTCTGCAGCTCTATGCATGGTTCTGCTTCCACCAGGAACATTCAGCTCTGGATTGGTTGGCATGGTTCTCTCCTATGGCCTTACCTTAAACGCTTCCTTAGTATTTTTAATTCAAAATCAATGCAGTCTAGAAAATTACATAGTATCCGTAGAGAGGATAAATCAATATATGCATATACCAAGTGAGGCCCCAGAAGTAATAGCAGGAAATCGTCCTCCTTCAAATTGGCCAGTTGCTGGTAAAGTAGAACTAAATGACTTGCAGATACGATACAGGCCATATGGACCACTTATACTTCATGGAATCACATGCACATTCGAAGCAGGACACAAGATTGGAATTGTTGGAAGAACAGGCAGTGGAAAGTCCACTCTTATCAGTGCATTATTTCGTCTGGTGGAGGCAGCTGGTGGAAAAATTGTAGTTGATGGCATAGACATATCTTCTATTGGCCTTCATGATTTGAGGTCACGTTTTGGTGTTATACCTCAGGATCCTACCCTTTTTAACGGAACTGTTAGATATAATTTAGACCCTTTATCTCAATACTCTGATCGAGAAATTTGGGAGGTTCTTGGGAAGTGTCAGCTGCGAGAAGTTGTACAAGAGAAAGAAGAGGGACTAAACTCCTCAGTTGTGGAAGATGGATCAAACTGGAGCATGGGACAAAGGCAATTATTTTGTTTGGGGCGTGCGCTGTTAAGGAGAAGTAGGATATTGGTGTTGGATGAAGCAACTGCATCAATTGACAACGCAACTGATTTGATTCTGCAGAAAACCATTAGAACTGAGTTTGCAGATTGTACAGTGATCACAGTAGCACACAGAATACCAACCGTGATGGATTGCAGTATGGTTCTTTCAATTAGTGATGGAAAATTGGTGGAGTATGATGAACCAATGAACTTGATGAACAAAGAAGGATCGCTATTCAAGCAGCTTGTTAAGGAGTACTGGTCTCATTTTCATTCTGCAGAATCATATTGA 4527 0.3857 MKEFWSMFCAEADCPGTGGKQPFCFDLKTLKDPSSCFNQFLIFCFDVSVLVMLAFILIQKYLFRPFQGMFQVERYSNLQLISSIINASLGLLYLCLGIWVLEENLRKSHTVLPLSGWLLELFEGFRWLIVGLSVSLKLKQLPRSWLWLFSLVTLFLSSFLCVLSMSYAISNRELTFKEALDVLSFPGAVLLLLCTYKTPKCEDTATSIDEDFYDSLNNDFHEVDPYNYVTPFAKAGFLSRMSFWWLNPLMKIGQEKTLQDEDIPKLPELDRAEFCYLSFIEQLNTQKGKESLSQSSILWAIVFCHWKDILMSGLFALLKVLSVCTGPVLLNAFISIAEGNGSFKYEGYVLVLTLFITKIAESLSQRQWYFRTRLVGMKIRSMLTASIYRKILRLSGAARLTHSSGEIMNYVTVDAYRIGEFPFWFHQTWTTSVQLCIALIILFRAIGLATIASLVVIVLTVLCNTPLAKMQHKFQSKLVVAQDERLKVSSEALVNMKVLKLYAWETHFKNAIERLRNIELKLLSAVQLRKAYNIILFWISPVLVSAASFGACYFLNVPLHANNVFTFVATLRLVQEPITAIPDVVGVVIQAKVAFSRIVNFLEATELQSAKFKHRCFDDSIKGSISIKSADFSWEGNVSKSTLRNINLEIRHGQKLAICGEVGSGKSTLLTTILGEVPLTKGTIEVYGKFAYVSQTAWIQTGTIRENILFGSDLDAHRYQETLRRSSLLKDLELFPHGDLTEIGERGVNLSGGQKQRIQLARALYQNADVYLLDDPFSAVDAHTATNLFNVMSSSLLQILHLCGMSHSLLKKGFEIWQEYIMDGLKEKTVLLVTHQVDFLPAFDSVMLMSNGKILEVAPYHHLLTSSREFQNLVNAHNETAGSDNPLDVSSSQRDSTSAREITQAFMEKQLKATNENQLIKEEEREIGNTGFKPYLQYLNQKKGYAYFFMASFCHLMFVILQILQNSWMAANVDNSQVSTLQLIVVYFLIGVASIIFLLIRTLLVVAFGIQSSTYLFVQLINSLFRAPMSFYDCTPLGRILSRVSSDLSIMDLDIPFMLSFTTVGVIYLCSNLTVLAIVSWQVLVVSLPMIYAAIRLQKYYFSTAKELMRVNGTTKSFVANHIAETTAGAVTIRAFEEEDRFFKKNLDLIDINASPFFHSFASNEWLIQRLEVISALLLTSAALCMVLLPPGTFSSGLVGMVLSYGLTLNASLVFLIQNQCSLENYIVSVERINQYMHIPSEAPEVIAGNRPPSNWPVAGKVELNDLQIRYRPYGPLILHGITCTFEAGHKIGIVGRTGSGKSTLISALFRLVEAAGGKIVVDGIDISSIGLHDLRSRFGVIPQDPTLFNGTVRYNLDPLSQYSDREIWEVLGKCQLREVVQEKEEGLNSSVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDLILQKTIRTEFADCTVITVAHRIPTVMDCSMVLSISDGKLVEYDEPMNLMNKEGSLFKQLVKEYWSHFHSAESY 1508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g01959 1508 FunFam ABC transporter C family member 10 293 606 - -
Viun4g01959 1508 Pfam ABC transporter 643 777 IPR003439 GO:0005524
Viun4g01959 1508 Gene3D ABC transporter type 1, transmembrane domain 292 608 IPR036640 GO:0005524|GO:0016020
Viun4g01959 1508 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 627 876 IPR003439 GO:0005524
Viun4g01959 1508 Pfam ABC transporter 1279 1427 IPR003439 GO:0005524
Viun4g01959 1508 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 620 876 IPR027417 -
Viun4g01959 1508 FunFam ABC transporter C family member 5 911 1243 - -
Viun4g01959 1508 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1252 1494 IPR027417 -
Viun4g01959 1508 ProSitePatterns ABC transporters family signature. 750 764 IPR017871 GO:0005524|GO:0016887
Viun4g01959 1508 CDD ABCC_MRP_domain2 1260 1480 - -
Viun4g01959 1508 Gene3D ABC transporter type 1, transmembrane domain 909 1243 IPR036640 GO:0005524|GO:0016020
Viun4g01959 1508 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 956 1225 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Viun4g01959 1508 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 232 1496 - -
Viun4g01959 1508 FunFam ABC transporter C family member 3 1245 1497 - -
Viun4g01959 1508 Pfam ABC transporter transmembrane region 310 575 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Viun4g01959 1508 Pfam ABC transporter transmembrane region 947 1211 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Viun4g01959 1508 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 310 590 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Viun4g01959 1508 SMART AAA_5 1288 1480 IPR003593 GO:0016887
Viun4g01959 1508 SMART AAA_5 652 853 IPR003593 GO:0016887
Viun4g01959 1508 CDD ABC_6TM_ABCC_D1 312 598 IPR044746 GO:0140359
Viun4g01959 1508 Gene3D - 620 882 IPR027417 -
Viun4g01959 1508 Gene3D - 1246 1498 IPR027417 -
Viun4g01959 1508 CDD ABCC_MRP_domain1 625 853 - -
Viun4g01959 1508 SUPERFAMILY ABC transporter transmembrane region 936 1242 IPR036640 GO:0005524|GO:0016020
Viun4g01959 1508 CDD ABC_6TM_ABCC_D2 948 1237 IPR044726 GO:0140359
Viun4g01959 1508 SUPERFAMILY ABC transporter transmembrane region 298 598 IPR036640 GO:0005524|GO:0016020
Viun4g01959 1508 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1262 1496 IPR003439 GO:0005524
Viun4g01959 1508 FunFam Multidrug resistance-associated protein 4 610 809 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g01959 Viun-Chr4 34751934 34774077 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun4g01959 576 864 Calmodulin-binding Proteins AT2G36910 26.797 1.09e-22 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g01959 K05666 - gmx:100787314 2451.4