Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g01953 ATGTCTCTCTGTGAAGTTCCTAACCAAACCCAGAGCATAAGCGAAGTAAGCCCCCAGAAGGAAAATTGGAATATTATCGCTAGGGTCATTCGTTCATGGTTTGTTCCTGATTTCACTAAACAGAGGTGTCCTTTTTCCATGGAGTTCGTTATTCAAGACAAAGAGGGTTCTAAAATACATGCTTCAATTAGACGTACTCTAATTTACAAATTTCAAAATGACATTTCTGAAGGCCATGTTTATGCTATACAAAACTTCAGTGTTGCTCCGAATTCTGGAATATACAGAACAACACACCACCCTTATAAGATAAATTTCCAGTTTGGTACAAAAGTTTCTTTGGTTAATGTTAATTTGGTTCCTCATATTAAACCACAATACACACCTTTGTCTTTATTGACAACCTCTGCATTTGATACTGATTATTTGGTTGATATTTTGGGATTACTGGTCGGAGTGGGGACTGAAAGAGAATTGCAAGTTGATGGAAAGACAACAAAATTAAATGTCATAGCAATAGAAGCCGATGGGTTTCGAATAGAGTGTACTTTGTTTGGTATTTATGTGGATGAACTGAATGTATTTCTTTCGAGTGGAGAAGTACAAAATACTGCTGTGAGCATAGAATTTGCGAAAGTCAAAACTTTTCAAGATAAGGTTCAAGTTCAAAATTGTAAGTTCTGCACCCGTATTAAGTACAATGTTAACTTCAAGGAAGCATCTGAACTTAAATCAAGAATGATTGAGAACAATGAATCTCCCTCTCAAGGATTAACGCAACTTTCTCAGACTTCAAAAAATACTGTCGAAGAGGACTTTTTAACACTTACACCTAGAACCAACATTCAAGGTCTAAAAGATTGTAAAGAGGTCACCACTTTCATATTGTTTGGAACAATTAAGCATATCTTGGTTGACGATGACTGGTGGTATACTGCTTGTGTGTGCAACAAAGCTGTTTATCCAGATTCAAAGATGTTCTTTTGTGAAAAGTGTAACAAGCATGTTATAAAAGTCTTTCCAAGATATAGGATTAAGATCCGAGTTATGGACTCTTCCGATTCAACCACATTTGTCCTCTTTGATAGGGATGCAACTACCCTTTTCAAAAAAACTTGTGCTGATATGTTAGACGCTCATGATAAGGTATAG 1152 0.3602 MSLCEVPNQTQSISEVSPQKENWNIIARVIRSWFVPDFTKQRCPFSMEFVIQDKEGSKIHASIRRTLIYKFQNDISEGHVYAIQNFSVAPNSGIYRTTHHPYKINFQFGTKVSLVNVNLVPHIKPQYTPLSLLTTSAFDTDYLVDILGLLVGVGTERELQVDGKTTKLNVIAIEADGFRIECTLFGIYVDELNVFLSSGEVQNTAVSIEFAKVKTFQDKVQVQNCKFCTRIKYNVNFKEASELKSRMIENNESPSQGLTQLSQTSKNTVEEDFLTLTPRTNIQGLKDCKEVTTFILFGTIKHILVDDDWWYTACVCNKAVYPDSKMFFCEKCNKHVIKVFPRYRIKIRVMDSSDSTTFVLFDRDATTLFKKTCADMLDAHDKV 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g01953 383 CDD RPA1_DBD_A_like 25 112 - -
Viun4g01953 383 Gene3D - 8 114 IPR012340 -
Viun4g01953 383 SUPERFAMILY Nucleic acid-binding proteins 137 247 IPR012340 -
Viun4g01953 383 Pfam Replication factor-A C terminal domain 296 377 IPR013955 -
Viun4g01953 383 SUPERFAMILY Nucleic acid-binding proteins 279 379 IPR012340 -
Viun4g01953 383 Gene3D - 120 256 IPR012340 -
Viun4g01953 383 SUPERFAMILY Nucleic acid-binding proteins 12 114 IPR012340 -
Viun4g01953 383 CDD RPA1_DBD_C 294 381 IPR047192 -
Viun4g01953 383 Pfam Domain of unknown function DUF223 49 129 IPR003871 -
Viun4g01953 383 Gene3D - 257 382 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g01953 Viun-Chr4 34636235 34638143 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun4g01953 16 378 Core DNA Replication Machinery Family AT5G08020 23.846 5.09e-13 68.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g01953 - - vun:114180817 768.074