Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g01904 ATGGCAGATCTTGCTAACTACGGGAATGCCAACCGTGACATTGAACAAGCATTGATTGCTTTGAAAAAGGGTGCCCAACTTCTTAAATATGGTCGCAAAGGAAAGCCCAAGTTTTGTCCATTTAGACTTTCCAGTGACGAATCATCTTTAATCTGGATTACAAGTAGCGGAGAAAGAAATTTGAAGTTATCTTCTGTCTCTAGAATTATTCCTGGACAAAGAACTGCTGTTTTCCAACGTTACTTGCGCCCTGAGAAGGACTATTTGTCCTTTTCACTCATTTATGGTAACGGAAAGCGGTCGCTTGATTTGATTTGTAAAGATAAAGCCGAGGCAGAAGTGTGGATTGCTGGCCTCAAAGGACTGATATCTTCTGGTCAAGGTGGCCGGTCTAAAATTGATGGATGGAGTGACGGTGGTCTCATTCTTGATGATAACAGAGACTTAAAATCAAAAAGTCCAAGTGAAAGTTCTGCTAGCACTTCACGAGGCATCAGTTCTCCTGACATTTCTGTGAGTCTTCCAAATACTTCACCAAAGTCTTTTCAACCCGACAATACAATCTCTGAAAGGTCACATGCACCACCAGACCCAACAAACATGCAAGTGAAAGGATCTGGTTCAGATGCTTTTCGTGTCAGTGTTTCAAGTGCCCCTAGTACTTCGAGTCATGGATCTGCACCAGATGACTATGATGCTCTGGGGGATGTATACATATGGGGCGAGGTTATCTGTGATCATGTTAAAATTGGTGCTGATAAAAATGTCAATTATTTCAGCCCAAGGACAGATGTACTTCTCCCTAGACCACTGGAAGCAAATGTAGTTTTAGATGTGCATCATATAGCATGTGGTGTTAGACATGCTTCTCTAGTCACTCGGCAAGGTGAAGTTTTTACATGGGGCGAAGAATCAGGAGGACGCCTTGGCCATGGTGTTGGGAAGAATTTGGTTCAACCTCGTCTAGTTGAAGCATTGACTTCTACAACTATTGATTTTGTTGCCTGTGGAGAGTTCCATTCATGTGCTGTTACAATGGCTGGGGAACTTTACACATGGGGTGATGGTACTCATAATGCAGGGCTTCTTGGTCATGGAAGTGATGTCAGCCATTGGATACCAAAGAGAATTGCCAATTCATTAGAGGGACTTCAAATTGCATATGTTGCTTGTGGTCCATGGCACACAGCCTTGATAACTTCAACAGGGCAGCTGTTTACATTTGGTGATGGAACATTTGGTGTCCTGGGCCATGGAAATAGGGAAAATGTTTCATATCCTAAAGAAGTGGACTCCTTGTCTGGATTGAGGACAATATCTGTAGCATGTGGAGTGTGGCATACTGCAGCTGTTGTGGAGGTTATGGCAACACACTCCAGTACAAGTGTTTCATCAGGTAAATTGTTTACTTGGGGTGATGGAGACAAAAATCGCCTCGGACATGGGGACAAGGAGGCACGCCTTAAACCAACTTGTGTGCCTGCGCTTATTGATTACAATTTTCATAAAATTGCTTGTGGGCACAGTTTGACAGCAGGCCTGACAACATCTGGACGTGTTTTTACGATGGGAAGTACTGTTTATGGTCAACTTGGGAATCCCCAGTCTGATGGCAAGCTTCCATGCTTGGTTGGAGACAAGATTGCTGGTGAATGTGTTGAAGAAATTGCATGTGGTGCATATCATGTAGCTGTATTAACATCCAAAAATGAAGTTTATACTTGGGGGAAAGGTGCAAATGGGAGATTGGGTCATGGAGATATTGAAGATCGAAAAACACCAGCTTTGATTGAAGCATTGAAGGATAGACATGTGAAATATATAGCTTGTGGTTCAAACTACTCCGCTGCCATATGTCTTCATAAGTGGGTATCTGGTGCCGAGCAGTCTCAGTGCTCTACTTGTAGACAGGCATTTGGCTTTACTAGAAAGAGGCATAATTGTTATAACTGTGGACTTGTCCACTGCCATTCTTGCAGTTCAAGGAAAGCATTAAGAGCAGCATTGGCTCCTAATCCCGGCAAGCCATATCGTGTGTGTGATTCTTGTTATGCAAAGTTGAACAAGGTTGCTGAAGCTAGCAATAGTAATAGAAGGAATGCCTTGCCTCGTTTGTCAGGTGAAAACAAGGATAGGCTAGACAAATCTGACCTAAGGTTATCCAAGGCAATAATTCCTTCTAATGTTGATTTGATAAAACAACTAGATAACAAGGCAGCCAAACAAGGAAAGAAAAATGATACATTCTCACTGGTACGCACCTCACAACCACCTTCTCTGCTACAGCTGAAAGATGTTGTCATGTCCACTGCTCTTGATCTGAGACGAACAGTTCCAAGACCGGTTGTTGCACCATCAGGAGTAAGTTCCAGATCTGTGTCACCTTTCTCTAGAAGACCTAGCCCCCCTCGCTCGGCTACTCCAATTCCAACAACTTCAGGGCTTTCCTTCTCGAAAAGTATTTCTGATAGTTTGAAGAAGACAAATGAACTTTTAAATCAAGAAGTTCAGAAGTTACATACTCAGGTTGAGGGCCTGAGACAGAGATGTGAACTGCAAGAATTAGAGCTTCAAAGGTCAGCAAAAAAGACTGAAGAAGCTATGTCACTGGCTGCTGAGGAATCTGCAAAATGTAAAGCTGCAAAAGAAGTTATAAAGTCACTCACAGCACAGCTCAAAGATCTAGCTGAGAAGCTTCCTCCTGGAGTTTATGCTACTGAGAACATAAGACCAGCTTACCTACCAAATGGTCTTGAGCCAAATGGCATCCACTATCCAGATTCAAATGGGGAGCAGCAGCACTCCGGAGCAGAGTCAATCAGTGGCTCTAGTTTGGCTTCCATGGGACTTGAATCCTCTCTACTGAATAGAACTGCGCGGAATTCTCCAGGAACTAATGGAACTAGTCTACACCAGCAAATCCGGAGCCCTGTGATCTCTAATGGGACCAATAATTATCCAGATGTTAAATTGCCAAATGGTAGTGGTGTAATTCAGGCAGGCAGTGGTAGCACAGTTGATGATGGTAGGGATTCTGGGAATTTTCACAATGACGAGAGTGGTCTGAAATCAAGGAATGCTGTACCTGCTGCTAATACTAATCAAATTGAGGCAGAATGGATTGAACAGTATGAACCTGGTGTCTACATAACACTTGTGGCATTGCGTGATGGAACGAGAGATCTGAAGCGAGTTCGCTTCAGCCGAAGGAGATTTGGAGAGCACCAAGCAGAAACCTGGTGGTCGGAGAACCGGGACAAGGTATATGAAAGATACAATGTTCGCAGTGCCGACAAATCTACCGGCCAGGCGGCACGAAGTTCGGAAGGGGCTGGTTCACCTGTTTCCCAAACTTAG 3357 0.4379 MADLANYGNANRDIEQALIALKKGAQLLKYGRKGKPKFCPFRLSSDESSLIWITSSGERNLKLSSVSRIIPGQRTAVFQRYLRPEKDYLSFSLIYGNGKRSLDLICKDKAEAEVWIAGLKGLISSGQGGRSKIDGWSDGGLILDDNRDLKSKSPSESSASTSRGISSPDISVSLPNTSPKSFQPDNTISERSHAPPDPTNMQVKGSGSDAFRVSVSSAPSTSSHGSAPDDYDALGDVYIWGEVICDHVKIGADKNVNYFSPRTDVLLPRPLEANVVLDVHHIACGVRHASLVTRQGEVFTWGEESGGRLGHGVGKNLVQPRLVEALTSTTIDFVACGEFHSCAVTMAGELYTWGDGTHNAGLLGHGSDVSHWIPKRIANSLEGLQIAYVACGPWHTALITSTGQLFTFGDGTFGVLGHGNRENVSYPKEVDSLSGLRTISVACGVWHTAAVVEVMATHSSTSVSSGKLFTWGDGDKNRLGHGDKEARLKPTCVPALIDYNFHKIACGHSLTAGLTTSGRVFTMGSTVYGQLGNPQSDGKLPCLVGDKIAGECVEEIACGAYHVAVLTSKNEVYTWGKGANGRLGHGDIEDRKTPALIEALKDRHVKYIACGSNYSAAICLHKWVSGAEQSQCSTCRQAFGFTRKRHNCYNCGLVHCHSCSSRKALRAALAPNPGKPYRVCDSCYAKLNKVAEASNSNRRNALPRLSGENKDRLDKSDLRLSKAIIPSNVDLIKQLDNKAAKQGKKNDTFSLVRTSQPPSLLQLKDVVMSTALDLRRTVPRPVVAPSGVSSRSVSPFSRRPSPPRSATPIPTTSGLSFSKSISDSLKKTNELLNQEVQKLHTQVEGLRQRCELQELELQRSAKKTEEAMSLAAEESAKCKAAKEVIKSLTAQLKDLAEKLPPGVYATENIRPAYLPNGLEPNGIHYPDSNGEQQHSGAESISGSSLASMGLESSLLNRTARNSPGTNGTSLHQQIRSPVISNGTNNYPDVKLPNGSGVIQAGSGSTVDDGRDSGNFHNDESGLKSRNAVPAANTNQIEAEWIEQYEPGVYITLVALRDGTRDLKRVRFSRRRFGEHQAETWWSENRDKVYERYNVRSADKSTGQAARSSEGAGSPVSQT 1118
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g01904 1118 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 626 688 IPR017455 -
Viun4g01904 1118 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 441 451 IPR000408 -
Viun4g01904 1118 Pfam Regulator of chromosome condensation (RCC1) repeat 465 512 IPR000408 -
Viun4g01904 1118 Pfam Regulator of chromosome condensation (RCC1) repeat 403 451 IPR000408 -
Viun4g01904 1118 Pfam Regulator of chromosome condensation (RCC1) repeat 571 618 IPR000408 -
Viun4g01904 1118 Pfam Regulator of chromosome condensation (RCC1) repeat 348 399 IPR000408 -
Viun4g01904 1118 Pfam Regulator of chromosome condensation (RCC1) repeat 296 344 IPR000408 -
Viun4g01904 1118 Pfam Regulator of chromosome condensation (RCC1) repeat 517 566 IPR000408 -
Viun4g01904 1118 Gene3D - 186 452 IPR009091 -
Viun4g01904 1118 MobiDBLite consensus disorder prediction 1096 1118 - -
Viun4g01904 1118 PRINTS Chromosome condensation regulator RCC1 signature 389 405 IPR000408 -
Viun4g01904 1118 PRINTS Chromosome condensation regulator RCC1 signature 405 419 IPR000408 -
Viun4g01904 1118 PRINTS Chromosome condensation regulator RCC1 signature 507 525 IPR000408 -
Viun4g01904 1118 PRINTS Chromosome condensation regulator RCC1 signature 298 314 IPR000408 -
Viun4g01904 1118 PRINTS Chromosome condensation regulator RCC1 signature 348 364 IPR000408 -
Viun4g01904 1118 PRINTS Chromosome condensation regulator RCC1 signature 565 586 IPR000408 -
Viun4g01904 1118 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 466 517 IPR000408 -
Viun4g01904 1118 SMART fyve_4 620 689 IPR000306 GO:0046872
Viun4g01904 1118 SUPERFAMILY PH domain-like 13 123 - -
Viun4g01904 1118 Coils Coil 822 863 - -
Viun4g01904 1118 MobiDBLite consensus disorder prediction 1095 1118 - -
Viun4g01904 1118 FunFam PH, RCC1 and FYVE domains-containing protein 1 206 455 - -
Viun4g01904 1118 MobiDBLite consensus disorder prediction 153 206 - -
Viun4g01904 1118 FunFam Putative E3 ubiquitin-protein ligase HERC1 628 696 - -
Viun4g01904 1118 MobiDBLite consensus disorder prediction 145 206 - -
Viun4g01904 1118 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 389 399 IPR000408 -
Viun4g01904 1118 MobiDBLite consensus disorder prediction 782 817 - -
Viun4g01904 1118 Pfam Transcription factor BRX N-terminal domain 873 908 IPR027988 -
Viun4g01904 1118 ProSiteProfiles BRX domain profile. 1038 1093 IPR013591 -
Viun4g01904 1118 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 348 402 IPR000408 -
Viun4g01904 1118 MobiDBLite consensus disorder prediction 920 945 - -
Viun4g01904 1118 MobiDBLite consensus disorder prediction 926 945 - -
Viun4g01904 1118 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 296 347 IPR000408 -
Viun4g01904 1118 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 570 621 IPR000408 -
Viun4g01904 1118 CDD PH_PLC_plant-like 12 124 - -
Viun4g01904 1118 Pfam FYVE zinc finger 622 688 IPR000306 GO:0046872
Viun4g01904 1118 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 633 695 IPR013083 -
Viun4g01904 1118 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 518 569 IPR000408 -
Viun4g01904 1118 Coils Coil 871 898 - -
Viun4g01904 1118 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 403 454 IPR000408 -
Viun4g01904 1118 FunFam PH, RCC1 and FYVE domains-containing protein 1 456 627 - -
Viun4g01904 1118 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 235 295 IPR000408 -
Viun4g01904 1118 SUPERFAMILY RCC1/BLIP-II 234 623 IPR009091 -
Viun4g01904 1118 Gene3D - 13 129 IPR011993 -
Viun4g01904 1118 MobiDBLite consensus disorder prediction 978 1028 - -
Viun4g01904 1118 Pfam Pleckstrin homology domain 15 123 IPR001849 -
Viun4g01904 1118 Gene3D - 453 632 IPR009091 -
Viun4g01904 1118 Pfam Transcription factor regulating root and shoot growth via Pin3 1037 1092 IPR013591 -
Viun4g01904 1118 SUPERFAMILY FYVE/PHD zinc finger 622 697 IPR011011 -
Viun4g01904 1118 CDD FYVE_like_SF 631 684 - -
Viun4g01904 1118 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 58 893 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g01904 Viun-Chr4 34088403 34098267 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun4g01904 1039 1109 Major Intrinsic Protein MIP AT1G31880 50.000 1.09e-14 75.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g01904 - - gmx:100805364 1981.45
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun4g01904 4 34088403 34098267 Viun7g03150 7 34132207 34139876 PCT