Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g01903 ATGGCAAAGATAAGGGAGAAGTTATACATCACCGTTCCGAGTCTCTTTCGGTGCCCAATTTCAATGGACGTGATGCAATCCCCCGTGAGCCTCTGCACCGGCGTCACATACGATCGCGCCAGCATTCAGCACTGGCTTGACTCAGGACACGACACGTGTCCCGCCACCATGCAGGTTCTTCCCTCCAAAGACTTCATTCCCAATCTCACCCTTCACCGTCTCATCCGCCTGTGGCTCCTCTCCGCCGAACCTCCCTCGCCGGATTCCTCCGCCGACAACCTGCACTCCCTCCTCCGCCAAATCCAAACCGCCGACGATGACCTCGCCGGAACCCTCTCCAAAATCGCCGAATTCGCCACAACCTCTGGCGAAAATCGTCGGAAACTTGCCTACTTTCCCGGCTTCGACGCTGCCATCGTCCGCGCGCTGGCCAGGTGCAGTTCGCGGATAGACGCGTCTGAAAACGCGATTTACCTTCTCGACTCGGTCCTCCGAGAAAACGGAAATCCAGAGAAAATCCGAAGGCTAATTTTCGACGCTCGCCAACAATGCTTTGATTCGATGATTTTCGTTTTGCGAAACGGATCTACGAAATCGAAGATTGAAACGGTTAGAGTTTTGGAGTTTCTCGCGTGCGATTTTCAGTCCTCAAAATCCATCGCGGAAACGCAAGGACTGTTGTCTTCGGTAACAGGTTTTTTGAAGGACGGTGGAGAGGAGTTACGCGATGCCGTTTTGTTGTTTCTAGGCGTCGTTTCGGTGACTCGCTCCGCGAAGGTGGAACTAGTTAATTGCGGTGTTGTCGAATTGGTTTCGAAATTTTTACGAGAGTGTTCGTCGGCGAAGACGGCGGAGAGGTGTCTGAGGGTACTGGCGGTGCTGGCCACATGCGCGGAGGGGAGGGAGGCGATGGCAGCGGAGCCTTCATGTGCAGCGGCGGTAGTGGAGAGAGTGACGAAGGCGGCGAAGGCCGCGGCGGAGGACGCAGTGGTGGTGCTGTGGAGCTTGTGCTGTTTGAGCGGTAATGTGAAGGTGAGGGATGACGTGGCAAAGCGAAACGGTGTGGCAGTGATTTTATTGGTTATGCAGAGGGGGTGGGAGGAGCACGTGAGGAGCATGTGTGTGGATTTGATTAAGGTTTTGAAGGGTGCGTGCAAGAACAACGGGTTGGGGTTGGAACTAGGAACCTATGACACCAAAACCACTCATATCAAACCTTGCTAG 1224 0.5441 MAKIREKLYITVPSLFRCPISMDVMQSPVSLCTGVTYDRASIQHWLDSGHDTCPATMQVLPSKDFIPNLTLHRLIRLWLLSAEPPSPDSSADNLHSLLRQIQTADDDLAGTLSKIAEFATTSGENRRKLAYFPGFDAAIVRALARCSSRIDASENAIYLLDSVLRENGNPEKIRRLIFDARQQCFDSMIFVLRNGSTKSKIETVRVLEFLACDFQSSKSIAETQGLLSSVTGFLKDGGEELRDAVLLFLGVVSVTRSAKVELVNCGVVELVSKFLRECSSAKTAERCLRVLAVLATCAEGREAMAAEPSCAAAVVERVTKAAKAAAEDAVVVLWSLCCLSGNVKVRDDVAKRNGVAVILLVMQRGWEEHVRSMCVDLIKVLKGACKNNGLGLELGTYDTKTTHIKPC 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g01903 407 Gene3D - 79 391 IPR011989 -
Viun4g01903 407 PANTHER WDSAM1 PROTEIN 11 387 IPR045185 GO:0061630
Viun4g01903 407 SUPERFAMILY RING/U-box 8 81 - -
Viun4g01903 407 FunFam RING-type E3 ubiquitin transferase 4 83 - -
Viun4g01903 407 SUPERFAMILY ARM repeat 193 382 IPR016024 -
Viun4g01903 407 ProSiteProfiles U-box domain profile. 11 85 IPR003613 GO:0004842|GO:0016567
Viun4g01903 407 CDD RING-Ubox_PUB 13 65 IPR045210 -
Viun4g01903 407 SMART Ubox_2 15 78 IPR003613 GO:0004842|GO:0016567
Viun4g01903 407 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 11 78 IPR013083 -
Viun4g01903 407 Pfam U-box domain 12 81 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g01903 Viun-Chr4 34017827 34019344 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun4g01903 6 406 U-box Gene Family AT5G09800 37.831 6.93e-77 242
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g01903 - - gmx:100786235 608.216