Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g01887 ATGGATGCACAAGCCAAGAAAAAGGCTTTGTTTCGTGCTAAGTTGAATGCCCAGAAGAAGGAGAAGCGTATAGAATCTCCCCTTGTGAGGTATAATGAATTTGATCAACCTGTTTGCCGGGTTTGTGATGTTGTTCTGAAGTCCGAGTCTTTATGGGATGCACACCAAGTTTCTCGTAAGCATCGTGAGGCAATAAGTAATCTGAAAGCTAATGCAGCTGGATTAACTCAACAAAACAATGTGAAGCCTGTTTCAGATGCCAACATTCCCAAGGCTAAACCAGAACATCCTTTGGGCTCACAATCAAAACTTCCAGAAGGTTCACGAGAAGTGTCTAAGCCTCAATCTTCGTCAGTGCTTCCACCAGGTTTTTTTGATGACAGTGATTCAGGAAAGAAAAGTTCTGACCATTCAGCAGACTCTGACTTAGGTAGAAAACCTGGGGTTTCTGCTCAAAACCAGGTGTTAAACTTCAAGAAGGAGAAAGGTCATTTTCATGAAAATAGTGTTGCAGAGTCAAATGTTAGCGAGGCCTCAACGGAGAGTAAGCAGACATCAGTTAATAGTACTGATACAGAGATCACGCAAGTAAAAGGGAGTCTGCCTGAAGGATTTTTTGACAATAAGGAAGCTGATTTGCGTGCCCGTGGCATAAAGCTTGTTAAGCCAGATGTCAAAGACGAGTACAAGGAATTTGAGAAGTTGATTCAAGAAGATTTGCAGGAGGTTGACAACCGGTTGGAGGAAGAAGAGATTGATGCGGCCGAAATGATAGAGGAAGCTGAATCTGTGGAGCAGAAGATCTTCAGGGAGAAAGTGCAAATGTTGAAGAAGAGGAGATTGGATCTAAAAGCTGCTAATGCTGCAAAGCGTAATAAATCATCCGAGGCTGTAGCGAAGGATTCTACACACGAAGAGTCATCCAGTGATGATGAAAGTGAAGAAAATTTTGCCGTGGATTGGAGAGCACAACACTTGTGA 981 0.4281 MDAQAKKKALFRAKLNAQKKEKRIESPLVRYNEFDQPVCRVCDVVLKSESLWDAHQVSRKHREAISNLKANAAGLTQQNNVKPVSDANIPKAKPEHPLGSQSKLPEGSREVSKPQSSSVLPPGFFDDSDSGKKSSDHSADSDLGRKPGVSAQNQVLNFKKEKGHFHENSVAESNVSEASTESKQTSVNSTDTEITQVKGSLPEGFFDNKEADLRARGIKLVKPDVKDEYKEFEKLIQEDLQEVDNRLEEEEIDAAEMIEEAESVEQKIFREKVQMLKKRRLDLKAANAAKRNKSSEAVAKDSTHEESSSDDESEENFAVDWRAQHL 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g01887 326 SUPERFAMILY beta-beta-alpha zinc fingers 31 71 IPR036236 -
Viun4g01887 326 MobiDBLite consensus disorder prediction 169 197 - -
Viun4g01887 326 Gene3D Classic Zinc Finger 32 70 - -
Viun4g01887 326 Coils Coil 233 267 - -
Viun4g01887 326 MobiDBLite consensus disorder prediction 285 307 - -
Viun4g01887 326 Pfam Zinc-finger of C2H2 type 39 61 - -
Viun4g01887 326 MobiDBLite consensus disorder prediction 129 143 - -
Viun4g01887 326 MobiDBLite consensus disorder prediction 105 123 - -
Viun4g01887 326 MobiDBLite consensus disorder prediction 285 326 - -
Viun4g01887 326 MobiDBLite consensus disorder prediction 74 205 - -
Viun4g01887 326 Coils Coil 58 78 - -
Viun4g01887 326 PANTHER UNCHARACTERIZED 1 326 IPR040050 GO:0003676|GO:0005681|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g01887 Viun-Chr4 33779557 33785922 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun4g01887 1 326 C2H2 Transcription Factor Family AT3G02860 52.695 2.02e-95 283
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g01887 K13104 - gmx:100808515 483.026