Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g01848 ATGCAGCTAGGAGACTCAAGTGTGTTGGAGATCTCCTCCCATAGCGAGCCCGAGATGGCGGTGGCGGCGGCGGCGGAAGGAGCTGCTCACGGCGGCGAGGACGACGGTGGTGATGATGAGATGATTGGGGTGGATGTGGATGCAAATTCAGGTGAAGGAAATGAAGGTAATAAGATGAGCTTTGGAGGGAACCGGTGGCCCCGCCAAGAAACTTTGGCTCTCTTGAAGATAAGGTCGGATATGGATGCAGTGTTTCGTGATTCAAGTCTTAAAGGTCCACTATGGGAAGAAGTTTCAAGAAAACTGGCAGGGCTTGGATATCATCGAAGTGCAAAGAAGTGCAAGGAAAAGTTTGAGAACGTGTACAAGTACAACAAGAGAACGAAAGAGAACAAAAGTGGGAAATCACATGGAAAAACCTATAAATTCTTTGATCAATTACAAGCCCTTGAGAATCACCAGTTCACGATCTCTTACCCATCAAAACCACAACCTACTTTGGCAACAACAAACACACTAACGTTGCCAGCTAGACAAAGTGATCATGGTAACAACAACGTTATCTCTTATGTCACACCTTTTCCTTCCACAAACCCTACACACATTTCTCCTTCACCACCACAAACCACCGCCACCAACACCAACAACACCAACAACGACAATGTCACATATTCTTTGCCAAACATGAACACCCCTTTCTCAATCACCACCACCACCACCACCTCCACCTCTTCTTCCACAGCTTCTGATGAAGACTTGGAAGAGAGGTACCGGAGGAAGAGAAAGTGGAAGGACTACTTCAGGAGGCTCACTAGGAAGGTCCTCTTGAAACAAGAGGAAATGCAGATGAAGTTCTTGGAAGCCATGGACAAACGAGAGAGGGAAAGAGTGGCACAACAAGACAATTGGAGGATGCAAGAAATGGCAAGGATGAACAGGGAACATGAGATTCTTGTTCAGGAAAGATCAACAGCAGCAGCCAAAGATGCTGCAGTTATTGCATTATTGCAGAAGATGTATGGCCAGCAAAACACCACACAACATGTTCAAGCACAGCCACCAGAACAACAAAATCAAACAACGACGCTACAATCACAGCCTCCAACACTGAACAATAATTTTGAGATCAAGAAATTGAATAATGGTCACCACAGTGCTACAAGTACTAGCACCATTACTGTCACTACTTCTCCCGCGAGTTCTTCTTCTTCTAGATGGCCAAAGGCTGAAGTTCACGCTTTGATAAGGTTGAGGACGAGTCTTGACACTAAGTATCAAGAAAATGGACCAAAAGCTCCGTTGTGGGAAGATATATCGATCGCAATGCAGAGGCTTGGTTATAGCCGGAGTGCAAAGAGATGCAAGGAAAAGTGGGAGAACATCAACAAGTACTTCAAAAAAGTGAGGGAGAACAACAAAGAGAGGCGTGAAAATAGCAAAACATGTCCTTATTTTCACGAGCTTGATGCTATATACAAGGAAAAGAGCTTATCCCAGAACCCCTTTGGCGTGTTCCAGAACATGAAGCCGAACGAGATGATGATGATGGAGCCATTGATGGTGCAACCGGAGCAGCAATGGAGGCCTCCACCTCATTCGGAAGAGGGTACGGAGAAGAACTCTAGCGAAGAATATCAAGAAAAAGAAGAAGAAAACGGTGGTGACGACGACGATGATGATAATGATCACGTTGTTGTTGAAGAAGATGAAGATGGTGTGGAAGATGAAGCGTGTGAGACTGGGACAAATGATTAA 1755 0.4536 MQLGDSSVLEISSHSEPEMAVAAAAEGAAHGGEDDGGDDEMIGVDVDANSGEGNEGNKMSFGGNRWPRQETLALLKIRSDMDAVFRDSSLKGPLWEEVSRKLAGLGYHRSAKKCKEKFENVYKYNKRTKENKSGKSHGKTYKFFDQLQALENHQFTISYPSKPQPTLATTNTLTLPARQSDHGNNNVISYVTPFPSTNPTHISPSPPQTTATNTNNTNNDNVTYSLPNMNTPFSITTTTTTSTSSSTASDEDLEERYRRKRKWKDYFRRLTRKVLLKQEEMQMKFLEAMDKRERERVAQQDNWRMQEMARMNREHEILVQERSTAAAKDAAVIALLQKMYGQQNTTQHVQAQPPEQQNQTTTLQSQPPTLNNNFEIKKLNNGHHSATSTSTITVTTSPASSSSSRWPKAEVHALIRLRTSLDTKYQENGPKAPLWEDISIAMQRLGYSRSAKRCKEKWENINKYFKKVRENNKERRENSKTCPYFHELDAIYKEKSLSQNPFGVFQNMKPNEMMMMEPLMVQPEQQWRPPPHSEEGTEKNSSEEYQEKEEENGGDDDDDDNDHVVVEEDEDGVEDEACETGTND 584
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g01848 584 Gene3D - 406 467 - -
Viun4g01848 584 Gene3D - 66 127 - -
Viun4g01848 584 CDD GT1 405 469 - -
Viun4g01848 584 CDD GT1 64 129 - -
Viun4g01848 584 FunFam Trihelix transcription factor GT-2 406 467 - -
Viun4g01848 584 ProSiteProfiles Myb-like domain profile. 398 462 IPR001005 -
Viun4g01848 584 MobiDBLite consensus disorder prediction 194 248 - -
Viun4g01848 584 SMART sant 62 124 IPR001005 -
Viun4g01848 584 SMART sant 402 464 IPR001005 -
Viun4g01848 584 MobiDBLite consensus disorder prediction 1 41 - -
Viun4g01848 584 FunFam Trihelix transcription factor GT-2 66 127 - -
Viun4g01848 584 MobiDBLite consensus disorder prediction 531 547 - -
Viun4g01848 584 Pfam Myb/SANT-like DNA-binding domain 404 491 IPR044822 -
Viun4g01848 584 Pfam Myb/SANT-like DNA-binding domain 64 150 IPR044822 -
Viun4g01848 584 Coils Coil 276 296 - -
Viun4g01848 584 MobiDBLite consensus disorder prediction 194 251 - -
Viun4g01848 584 MobiDBLite consensus disorder prediction 548 578 - -
Viun4g01848 584 PANTHER FI21293P1 28 549 - -
Viun4g01848 584 MobiDBLite consensus disorder prediction 345 405 - -
Viun4g01848 584 ProSiteProfiles Myb-like domain profile. 58 122 IPR001005 -
Viun4g01848 584 MobiDBLite consensus disorder prediction 524 584 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g01848 Viun-Chr4 33135072 33138005 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun4g01848 61 527 Trihelix Transcription Factor Family AT1G76880 51.313 4.17e-135 405
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Viun4g01848 Myb_DNA-bind_4 2.6e-21 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g01848 - - gmx:100807507 791.186
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun4g01848 4 33135072 33138005 Viun7g03132 7 33897658 33901095 PCT