Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g01845 ATGTCCTTCCGCAGCATTGTTCGTGATGTGAGGGACGGGATTGGAAGCTTGTCAAGGCGGAGTTTTGACTTGAGGTTTTCCGGTGGTAGCAAGTCGAATAGTTCAGTCCATGAGGTGCATGAACGCCCTCCTGTTATACAGAATAGCCGGTGGGCAAGCCTTCCACCGGAGCTTCTTCGTGATGTTATTAGAAGATTGGAAGAAAGTGAGACAACATGGCCTGCTCGGAAGCATGTGGTTGCATGTGCTGCAGTGTGCAAGTCCTGGAGAGAAATGTGCAAAGAAATTGTTACCAGTCCTGAGTTCTGTGGGAAGATTACTTTCCCAGTTTCCCTGAAGCAGCCTGGTTCAAGGGATGGGGCCATTCAGTGTTTCATCAAGAGAGACAAATCTAATCTGACATACCACCTATTCCTTTGTCTGAGTCCTGCATTGCTAGTTGAAAATGGAAAGTTTCTTCTTTCTGCGAAAAGGACCAGAAGAACGACTTGCACAGAGTATATTATATCAATGGACGCGGACAACATATCGAGATCCAGTAGCACTTACATTGGAAAACTGCGGTCTAATTTTCTTGGCACCAAGTTCATAATTTATGATACACAGCCTCCCTACAACAACTCTCAGTTGTCTCCTCCGGGTCGAAGCCGAAGGTTTAATTCCAAAAAGGTTTCTCCCAAGGTTCCTAGTGGCAGCTACAATATTGCCCAGATCACCTATGAGTTGAATGTCCTTGGTACTAGGGGCCCAAGGAGGATGAACTGCACCATGCACTCAATCCCTGTATCAGCCCTTGAGCCTGGTAGCACCGTGCCCGGCCAGCCGGAGCTTCTTCCCCGTGCACTGGAAGATTCCTTCAGGAGCATATCCTTTGCAAGATCAATTTACAGCTCAACTGATTTTAGCAGTTCTAGATTCTCAGACATAGTTGTGGCAGGCAATGAAGAGGAACAAGGAAAGGACATGCCTCTAGTTCTTAAAAACAAAGCTCCAAGATGGCATGAGCAGCTGCAGTGTTGGTGCCTCAACTTCAGGGGAAGGGTGACTGTCGCATCTGTCAAGAATTTCCAGCTGATTGCTGCAACACAGCCGGCTGCAGCTGCCAGTGGTGGTGGTGGTGGTGGTGCTCCTCCTCCTCCTCCACCGCAGCCGTCATCGCAGCCACCTCAGTCTGATCATGACAAGATTATTCTTCAGTTTGGCAAGGTTGGGAAGGACATCTTTACTATGGACTATAGATATCCCCTTTCTGCATTTCAGGCTTTCGCCATTTGCTTGACTAGCTTTGACACAAAACTGGCTTGTGAATAG 1311 0.479 MSFRSIVRDVRDGIGSLSRRSFDLRFSGGSKSNSSVHEVHERPPVIQNSRWASLPPELLRDVIRRLEESETTWPARKHVVACAAVCKSWREMCKEIVTSPEFCGKITFPVSLKQPGSRDGAIQCFIKRDKSNLTYHLFLCLSPALLVENGKFLLSAKRTRRTTCTEYIISMDADNISRSSSTYIGKLRSNFLGTKFIIYDTQPPYNNSQLSPPGRSRRFNSKKVSPKVPSGSYNIAQITYELNVLGTRGPRRMNCTMHSIPVSALEPGSTVPGQPELLPRALEDSFRSISFARSIYSSTDFSSSRFSDIVVAGNEEEQGKDMPLVLKNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLIAATQPAAAASGGGGGGAPPPPPPQPSSQPPQSDHDKIILQFGKVGKDIFTMDYRYPLSAFQAFAICLTSFDTKLACE 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g01845 436 FunFam Tubby-like F-box protein 108 436 - -
Viun4g01845 436 PANTHER TUBBY-RELATED 29 434 - -
Viun4g01845 436 ProSitePatterns Tub family signature 2. 421 436 IPR018066 -
Viun4g01845 436 MobiDBLite consensus disorder prediction 367 393 - -
Viun4g01845 436 FunFam Tubby-like F-box protein 46 99 - -
Viun4g01845 436 CDD F-box_AtTLP-like 51 95 - -
Viun4g01845 436 SUPERFAMILY Tubby C-terminal domain-like 100 436 IPR025659 -
Viun4g01845 436 MobiDBLite consensus disorder prediction 205 226 - -
Viun4g01845 436 Pfam Tub family 112 431 IPR000007 -
Viun4g01845 436 SUPERFAMILY F-box domain 44 95 IPR036047 GO:0005515
Viun4g01845 436 PRINTS Tubby superfamily signature 167 183 IPR000007 -
Viun4g01845 436 PRINTS Tubby superfamily signature 232 259 IPR000007 -
Viun4g01845 436 PRINTS Tubby superfamily signature 344 360 IPR000007 -
Viun4g01845 436 PRINTS Tubby superfamily signature 414 436 IPR000007 -
Viun4g01845 436 PRINTS Tubby superfamily signature 393 412 IPR000007 -
Viun4g01845 436 PRINTS Tubby superfamily signature 183 207 IPR000007 -
Viun4g01845 436 PRINTS Tubby superfamily signature 326 343 IPR000007 -
Viun4g01845 436 Gene3D - 46 98 - -
Viun4g01845 436 MobiDBLite consensus disorder prediction 374 388 - -
Viun4g01845 436 Gene3D Tubby Protein; Chain A 110 430 IPR025659 -
Viun4g01845 436 Pfam F-box domain 51 97 IPR001810 GO:0005515
Viun4g01845 436 ProSitePatterns Tub family signature 1. 344 357 IPR018066 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g01845 Viun-Chr4 32870415 32874366 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun4g01845 1 436 TUB Transcription Factor Family AT1G76900 68.251 0.0 599
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Viun4g01845 Tub 2.6e-116 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g01845 K19600 - gmx:100803729 750.355