Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g01826 ATGGCCGCTTCCACCATGGCTCTCTCTTCACCGTCACTGGCTGGCCAAGCCATCAAGCTCTCCCCTTCCACCTCGGAGCTCTCCGGTGGAAGGATTTCCATGAGGAAGACGGCCTCCAAGTCGGTTTCTTCCGAAAGCCCATGGTACGGCCCAGACCGTGTCAAGTACTTGGGCCCATTCTCTGGCGAGGCCCCTTCGTACTTGACAGGGGAATTCCCAGGTGACTATGGGTGGGATACCGCCGGACTTTCTGCTGACCCGGAGACATTTGCGAAAAATCGTGAACTGGAAGTCATCCACTCTCGATGGGCGATGTTGGGGGCATTGGGGTGTGTGTTCCCTGAACTGTTGGCCCGAAACGGTGTGAAGTTTGGGGAGGCGGTGTGGTTCAAGGCTGGGTCTCAGATTTTCAGTGAGGGTGGGCTTGACTACTTGGGCAACCCAAGCCTGATCCATGCACAGAGCATCCTTGCCATCTGGGCCACACAGGTCATCTTGATGGGTGCAGTGGAGGGTTACCGCATTGCCGGTGGGCCTTTGGGTGAGGTCACTGACCCAATCTACCCGGGTGGGAGCTTCGACCCATTGGGCCTTGCTGAAGACCCAGAGGCTTTTGCTGAGTTGAAGGTGAAAGAGTTAAAGAATGGGAGATTGGCCATGTTCTCCATGTTTGGTTTCTTCGTTCAAGCCATTGTCACTGGCAAGGGTCCTTTGGAGAACCTCGCCGATCACCTTGCCGACCCTGTCAACAACAATGCCTGGGCCTACGCCACCAACTTTGTCCCCGGAAACAAGTTGGCTGGGTCTCAGATATTCAGTGAGGGTGGGCTTGACTACTTGGGCAACCCAAGCCTAATCCATGCACAGAGCATCCTTGCCATCTGGGCCACACAAGTCATCTTGATGGGTGCAGTGGAGGGTTACCGCATTGCCGGTGGGCCTTTGGGTGAGGTCACTGACCCAATCTACCCGGGTGGGAGCTTTGACCCATTGGGCCTTGCTGAAGACCCAGAGGCTTTTGCTGAGTTGAAGGTGAAAGAGTTGAAGAATGGGAGATTGGCCATGTTCTCCATGTTTGGTTTCTTCGTTCAAGCCATTGTCACTGGCAAGGGTCCTTTGGAGAACCTCGCTGATCACCTTGCCGACCCCGTCAACAACAACGCCTGGGCCTATGCCACTAACTTTGTCCCCGGAAAGTAA 1200 0.5525 MAASTMALSSPSLAGQAIKLSPSTSELSGGRISMRKTASKSVSSESPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVILMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLAEDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGNKLAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVILMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLAEDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g01826 399 Gene3D Chlorophyll a/b binding protein domain 55 257 - -
Viun4g01826 399 Gene3D Chlorophyll a/b binding protein domain 260 392 - -
Viun4g01826 399 SUPERFAMILY Chlorophyll a-b binding protein 267 396 - -
Viun4g01826 399 SUPERFAMILY Chlorophyll a-b binding protein 47 261 - -
Viun4g01826 399 MobiDBLite consensus disorder prediction 23 46 - -
Viun4g01826 399 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 1 263 IPR001344 GO:0009765|GO:0016020
Viun4g01826 399 FunFam Chlorophyll a-b binding protein 3A, chloroplastic 282 392 - -
Viun4g01826 399 FunFam Chlorophyll a-b binding protein, chloroplastic 55 257 - -
Viun4g01826 399 Pfam Chlorophyll A-B binding protein 64 230 IPR022796 -
Viun4g01826 399 Pfam Chlorophyll A-B binding protein 278 365 IPR022796 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g01826 Viun-Chr4 32469769 32476952 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun4g01826 188 399 Chloroplast and Mitochondria Gene Families AT2G34430 66.355 5.34e-85 258
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g01826 K08912 - cave:132168857 768.844