Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g01817 ATGTCCTTGCTAACGGTGGCGTACCAAAGGGGCTCAGGTGAGTTTATCCGGTTCACCGCGGATCACGGTGGCGGTGATGATGGTGGCGATGGTTATAGACATGATGGTGACGGTGGTGGCGGTAGTGGTGGTTCACCGGGATTGAGTTTTAACCAAGGGATGCAACAAGGTGAGGTAACAATGCAAGGTGGCTCTTTGGTTTCAGGGTACAACAGGGGTGATCCAGAGTTTAGGCAAATGGTTTCGGCTTTGACACATGTTGTTTCATCAGGGTCTGACCACAGGAGCACCGAATGGATGCAACAAAGTGGTTATCCTATGATGTCAGGTTTCGGACATGCACCTTCTTCTCTTTCTCGTTTCTCTTCTTCTCCTTCTTCTGGACCCTCTGGTGTTGGTCAGAAAAGAGGGAGAGAAGAACAAGAGACTGATAACATCTCTTCTTCACATAACCTGATGCAACAACAAACTACTCCGAGACTCTTCAGAACAACACTAGGTCACTTCGTGCTACCTTCTCAAGGAGACTCATCTTCAGTGACTGAAGAAACTCTCACCTCTACAATTACAACAGTATCAGCGGTCACAGCTACAACAACTGCTGCTGTGACTGCTGTTACTGAAACCAGTGGAGGTGGTGGAGAAAGGAGGAGAAAGTACAGGGGAGTGAGACAGAGGCCATGGGGAAAATGGGCAGCTGAAATCCGTGATCCACACAAAGCAGCAAGAGTTTGGCTTGGCACATTTGACACAGAAGAAGCAGCAGCAAGAGCCTATGATGAAGCTGCATTGAGGTTCAGAGGCAACAGGGCAAAGCTAAACTTCCCTGAAAATGTTAGAGCAGTTCCACCTCTTCAACCTTTCCAACCCGCCACAAGACTAACCGTTTCTGACTCCTCCACCACTCAATTCCGGCCACTCACCGCAGCCGTGGCGGCGCCATCCTTCATTCAGCCTCCACAGATGCAAACCTCCTCTGACTTGATCAGAGACTACTTGCAATACTCTCAGCTTCTACAGAGTGATTTTCAACAGCAGCATCATCATCAGCATCAACAACAACAACAACCACAACCACAACCTTCTAGTTTGATTCAACAGTTATACTACAATGCACAATTGGCTTCTCTTCAATCACCTTCTTTATTACAATCATCACCTTCATTCTCTTCTTCTGTATCACCAACTCCATTCCCGTTATTCTCAACATCTCCTCAATTTTCCTCTGCTTCATTTCCCATGTTTTCAACTCAACAAATGAGCTATTTCCAGCCACTGGAAAGCTTCCCTCCAGCCGGTGGCAGGCCGGAGATTCCGCCGTCAACATGGTCCGATACCGGTGGCCAGCCACCACCTTCCGGTTGA 1365 0.4821 MSLLTVAYQRGSGEFIRFTADHGGGDDGGDGYRHDGDGGGGSGGSPGLSFNQGMQQGEVTMQGGSLVSGYNRGDPEFRQMVSALTHVVSSGSDHRSTEWMQQSGYPMMSGFGHAPSSLSRFSSSPSSGPSGVGQKRGREEQETDNISSSHNLMQQQTTPRLFRTTLGHFVLPSQGDSSSVTEETLTSTITTVSAVTATTTAAVTAVTETSGGGGERRRKYRGVRQRPWGKWAAEIRDPHKAARVWLGTFDTEEAAARAYDEAALRFRGNRAKLNFPENVRAVPPLQPFQPATRLTVSDSSTTQFRPLTAAVAAPSFIQPPQMQTSSDLIRDYLQYSQLLQSDFQQQHHHQHQQQQQPQPQPSSLIQQLYYNAQLASLQSPSLLQSSPSFSSSVSPTPFPLFSTSPQFSSASFPMFSTQQMSYFQPLESFPPAGGRPEIPPSTWSDTGGQPPPSG 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g01817 454 Gene3D AP2/ERF domain 218 278 IPR036955 GO:0003700|GO:0006355
Viun4g01817 454 SMART rav1_2 219 282 IPR001471 GO:0003700|GO:0006355
Viun4g01817 454 MobiDBLite consensus disorder prediction 423 454 - -
Viun4g01817 454 PANTHER DNA-BINDING DOMAIN 160 356 IPR044808 GO:0003700|GO:0009873
Viun4g01817 454 MobiDBLite consensus disorder prediction 343 362 - -
Viun4g01817 454 FunFam Ethylene-responsive transcription factor 2 218 277 - -
Viun4g01817 454 SUPERFAMILY DNA-binding domain 219 277 IPR016177 GO:0003677
Viun4g01817 454 PRINTS Ethylene responsive element binding protein signature 220 231 IPR001471 GO:0003700|GO:0006355
Viun4g01817 454 PRINTS Ethylene responsive element binding protein signature 242 258 IPR001471 GO:0003700|GO:0006355
Viun4g01817 454 MobiDBLite consensus disorder prediction 107 156 - -
Viun4g01817 454 MobiDBLite consensus disorder prediction 19 53 - -
Viun4g01817 454 ProSiteProfiles AP2/ERF domain profile. 219 276 IPR001471 GO:0003700|GO:0006355
Viun4g01817 454 CDD AP2 219 278 IPR001471 GO:0003700|GO:0006355
Viun4g01817 454 Pfam AP2 domain 219 268 IPR001471 GO:0003700|GO:0006355
Viun4g01817 454 MobiDBLite consensus disorder prediction 20 34 - -
Viun4g01817 454 MobiDBLite consensus disorder prediction 115 131 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g01817 Viun-Chr4 32337551 32340312 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun4g01817 216 283 AP2-EREBP Transcription Factor Family AT2G33710 77.941 7.12e-33 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Viun4g01817 AP2 3.4e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g01817 - - vun:114180418 685.641
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun4g01817 4 32337551 32340312 Viun4g01817 4 32337551 32340312 ECH
Viun4g01817 4 32337551 32340312 Viun7g03092 7 33589209 33591861 PCT