Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g01770 ATGGCACGGAGAATCTCATTATCCTTGTCTTCCTCCACCCATACATGGATTTATGACGTCTTTCTAAGTTTTAGAGGAGAAGACACTCGTTTTCAGTTTACTCATAATCTCTACCATTCCTTGTGCGAAGCGGGGATTCATACTTTCATCGACCAGGAAGGTCTTAGAATAGGGGAAGAAATTACACCTGTTCTTTTCCACGCAATTCAAAATTCAAGGATTTCCATCATTGTCTTCTCCAAAAGCTATGCATCTTCAACCTATTGCTTAAATGAACTTGTAAGGATCCTTGAATGCGCCAAGGAAGAAGGTCCATCAATATATCCAATATTTTATGACGTGGATCCGTCAGAAGTTCGACATCAGACGGGAACTTATGCAGAAGCATTGTCAAAACTCGAAACTAGGTTCCACAACGACGCTGACAACGAGAAGGTACAAAAATGGAGGAAGGCCTTACATGAAGCAGCTAATCTATCAGGCTGGCATTACCAACATGGGTCTCAACCAGAATATGAGTTCATAAGAAAGATTGTTCAAGCAATCTCTAGAAAGATAAATTACATCCCTTTATATGTTGCCGATAACCCAATTGGGCTGGAGTATGCACTGGAAGGAGTGAAATCTCTCCTTGAAGATGGATCTGAAATCAACATGATAGGAATTTATGGTATCGGGGGTATAGGGAAAACCACCATTGCTCGTGCCGTGTATAACAATATTTTTTGGGGTTTTCAAGGTTCGTGTTTTCTACCTGACATAAGAGAAAAGGCGATTAATAAACACGGTATTGTCCAACTTCAAGAATTAGTACTTTCTGAAATACTCAAGGAAAAAGATATTAAAGTGGGAGATGTCAATAGAGGAATACCGTTAATAAAAAGGAGACTTCAACAGAAGAAGGTCCTTCTAGTTCTTGATAATGTCGACAAATTAGAGCAGTTAAAGGCACTTGCAGGGGGATATGATTGGTTTGGCTCTGGAAGTATAATCATCATCACCACAAGAGACAAGCACTTGCTAGATGCTCATGGGGTGGTAAACTTATATGAGGTTAAACCATTACATGTTGAAAAAGCTCTGGAATTGTTTAACTGGCATGCCTTCAGAAGTGATAAAGTTGGTCCACCATACATGAGTATTTCCAACCGTGCCGTTTCTTATGCGTGCGGTCTTCCTTTGGCTCTGGAAGTTATAGGATCCCACTTATTCGGAAAAAGTTTAGATGAGTGCCATTCTGCATTAGATAAATATGAAAGTATTCCTCATCGAAAGATTCATGAAATACTAAAAGTAAGCTACGATGGTTTGGAAGAAAATGAGAAGGGAATTTTCCTAGACATTGCATGTTTCTTCAATAACTGTGAACTGGGCAATGTCACACCAATGCTAAAAGCTCATGGTTTTTATGCAGAAGATGGTTTGAGAGTGTTAGCTGACAGATCTCTCATAAAGATTAATTCTTCTGATTTTGTGAGAATGCATGACCTAATTCGAGACACAGGTAGAGAGATTGTAAGGCAGGAATCAACACTTGAGCCAGGCAGACGTAGTAGATTATGGTTTAACCAGGACATTGTTCACGTTTTGGAAGGAAATACGGGATCTGATAAAATAGAATTCATAAAGCTTGAAGGGTACAACAACATACAAGTGCAATGGAATGGAAAAGCCTTAAAGAAAATGAAGAACTTGAGGATTTTGATAGTTGAAGATGCAACCTTTTCTACAAGCCCCGAGCATCTACCAAATAGCTTGAGAGTGCTAGACTGGAGTTGCTATCCTTCGCCATCTTTACCTTCTGATTTCAATCCAAAACGTTTTGAGATAATCCTTATGCCTGAAAGTAGCCTTCTGATGTTCGAACCACAAAAGATGTTGGAATCATTGTCTATAATAAACCTTGAAGATTGCAAGTTCTTAACTAATCTACCGAGCCTACGAGAGGCATCACTCTTAACAACTCTGCGTCTCGATAGATGCTGTAATTTAGTTAACATTGATGAATCAATTGGGTTTCTTGATAAGCTTCGGTTGTTGAGTGCTAAAGGGTGCACCAAGCTGAAAACTCTTGCACCCCGCATCATGTTGACATCTCTTGAAACTTTGGATCTTGCGATGTGCTATAATCTTGAGAGTTTCCCAGAAGTATTGGGAAAGATGGAGAAAATAAAGACAATATATTTAGACGACACAGACATAGAGAAATTGCCATTTTCAATTGGAAATTTTGTTGGGCTGGAACTATTGTCCTTGAAGGGATGCGAAAGGCTTCATCAGTTACCAGGTAGTATATGCATGATGCCGAAAGTTAGAGTGGTAATTGGTTATGGGCATGAAACATATAATTTTTTTGAAAAAGAGTTGAGCTCAGACGTGTCTCCAATGGCAATGCTTATTGGTGGTTCTAACCTATATCTTGATGTGTATTATCCATACATGAATCCCAATAATGGCATCCAGGTATGCAGTCCTAATCCTCTTATGCATTCTGATTTCAATTTGTTATTCTCAAAGCTCAGGAGGGAAGAAGACTGGTATCGCAGATGCAGGGTATCAGTGATGCATTTCTCGTTTCGAAAGAAATTTCCTAAGATAGCGCTATGTTGTTCATTATTTTTTCCTGCGATGAAAAGAGTCATGATAATGACTTTTAATTTCAGAGTATACATTAATGATACTTTGCAATTCAGTGGTATGTGCAATTTCATGTTTAGAGGGTATGAAAAAATACTTTGGTGTGATCTAGAAGGGAAAGTGGAGAGGGTGTTTTCAGAGCAAGAGTGGAACAGAGCTGAGATTGCGTTTGAGTTGGACTTCCCTATGCGAAGAAATACTAGAAATGGAATCACAACAAATAGCATTGGTAGAGGAAATCTAAGTTGGAGCCTAATTGGTGTGTACGAGGAAGGAAATAATAAAGAGGATATAGAATTTGAAGATCCCATGTCAATTTTTCCATTAAGTAACACACAACCTCTTTCTTCATTATCTAGTTCTTTGCACTATGTTGTTAGTCTAGGATTTCGTCAAGGATGGGTGGATATGGATTAA 3054 0.387 MARRISLSLSSSTHTWIYDVFLSFRGEDTRFQFTHNLYHSLCEAGIHTFIDQEGLRIGEEITPVLFHAIQNSRISIIVFSKSYASSTYCLNELVRILECAKEEGPSIYPIFYDVDPSEVRHQTGTYAEALSKLETRFHNDADNEKVQKWRKALHEAANLSGWHYQHGSQPEYEFIRKIVQAISRKINYIPLYVADNPIGLEYALEGVKSLLEDGSEINMIGIYGIGGIGKTTIARAVYNNIFWGFQGSCFLPDIREKAINKHGIVQLQELVLSEILKEKDIKVGDVNRGIPLIKRRLQQKKVLLVLDNVDKLEQLKALAGGYDWFGSGSIIIITTRDKHLLDAHGVVNLYEVKPLHVEKALELFNWHAFRSDKVGPPYMSISNRAVSYACGLPLALEVIGSHLFGKSLDECHSALDKYESIPHRKIHEILKVSYDGLEENEKGIFLDIACFFNNCELGNVTPMLKAHGFYAEDGLRVLADRSLIKINSSDFVRMHDLIRDTGREIVRQESTLEPGRRSRLWFNQDIVHVLEGNTGSDKIEFIKLEGYNNIQVQWNGKALKKMKNLRILIVEDATFSTSPEHLPNSLRVLDWSCYPSPSLPSDFNPKRFEIILMPESSLLMFEPQKMLESLSIINLEDCKFLTNLPSLREASLLTTLRLDRCCNLVNIDESIGFLDKLRLLSAKGCTKLKTLAPRIMLTSLETLDLAMCYNLESFPEVLGKMEKIKTIYLDDTDIEKLPFSIGNFVGLELLSLKGCERLHQLPGSICMMPKVRVVIGYGHETYNFFEKELSSDVSPMAMLIGGSNLYLDVYYPYMNPNNGIQVCSPNPLMHSDFNLLFSKLRREEDWYRRCRVSVMHFSFRKKFPKIALCCSLFFPAMKRVMIMTFNFRVYINDTLQFSGMCNFMFRGYEKILWCDLEGKVERVFSEQEWNRAEIAFELDFPMRRNTRNGITTNSIGRGNLSWSLIGVYEEGNNKEDIEFEDPMSIFPLSNTQPLSSLSSSLHYVVSLGFRQGWVDMD 1017
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g01770 1017 ProSiteProfiles TIR domain profile. 16 182 IPR000157 GO:0007165
Viun4g01770 1017 FunFam Disease resistance protein (TIR-NBS-LRR class) 14 188 - -
Viun4g01770 1017 PRINTS Disease resistance protein signature 296 310 - -
Viun4g01770 1017 PRINTS Disease resistance protein signature 695 711 - -
Viun4g01770 1017 PRINTS Disease resistance protein signature 389 403 - -
Viun4g01770 1017 PRINTS Disease resistance protein signature 219 234 - -
Viun4g01770 1017 Gene3D - 191 347 IPR027417 -
Viun4g01770 1017 SUPERFAMILY Toll/Interleukin receptor TIR domain 10 162 IPR035897 -
Viun4g01770 1017 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 18 779 IPR044974 GO:0006952
Viun4g01770 1017 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 185 448 IPR027417 -
Viun4g01770 1017 Pfam TIR domain 18 187 IPR000157 GO:0007165
Viun4g01770 1017 Gene3D - 11 190 IPR035897 -
Viun4g01770 1017 SUPERFAMILY "Winged helix" DNA-binding domain 425 531 IPR036390 -
Viun4g01770 1017 SUPERFAMILY L domain-like 544 774 - -
Viun4g01770 1017 Gene3D Ribonuclease Inhibitor 525 799 IPR032675 -
Viun4g01770 1017 Gene3D - 355 438 IPR042197 -
Viun4g01770 1017 SMART till_3 17 159 IPR000157 GO:0007165
Viun4g01770 1017 Pfam NB-ARC domain 202 420 IPR002182 GO:0043531
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g01770 Viun-Chr4 31719619 31723363 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun4g01770 18 765 WRKY Transcription Factor Family AT4G12020 33.290 1.56e-90 316
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g01770 - - gmx:100797941 1326.23