Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g01769 ATGGCACGGAGAATCTCATTATCCTTGTCTTCCTCCACCCATACATGGATTTATGACGTCTTTCTAAGTTTTAGAGGAGAAGACACTCGTTTTCAGTTTACTCATAATCTCTACCATTCCTTGTGCGAAGCGGGGATTCATACTTTCATCGACCAGGAAGGTCTTAGAATAGGGGAAGAAATTACACCTGTTCTTTTCCACGCAATTCAAAATTCAAGGATTTCCATCATTGTCTTCTCCAAAAGCTATGCATCTTCAACCTATTGCTTAAATGAACTTGTAAGGATCCTTGAATGCGCCAAGGAAGAAGGTCCATCAATATATCCAATATTTTATGACGTGGATCCGTCAGAAGTTCGACATCAGACGGGAACTTATGCAGAAGCATTGTCAAAACTCGAAACTAGGTTCCACAACGACGCTGACAACGAGAAGGTACAAAAATGGAGGAAGGCCTTACATGAAGCAGCTAATCTATCAGGCTGGCATTACCAACATGGGTCTCAACCAGAATATGAGTTCATAAGAAAGATTGTTCAAGCAATCTCTAGAAAGATAAATTACATCCCTTTATATGTTGCCGATAACCCAATTGGGCTGGAGTATGCACTGGAAGGAGTGAAATCTCTCCTTGAAGATGGATCTGAAATCAACATGATAGGAATTTATGGTATCGGGGGTATAGGGAAAACCACCATTGCTCGTGCCGTGTATAACAATATTTTTTGGGGTTTTCAAGGTTCGTGTTTTCTACCTGACATAAGAGAAAAGGCGATTAATAAACACGGTATTGTCCAACTTCAAGAATTAGTACTTTCTGAAATACTCAAGGAAAAAGATATTAAAGTGGGAGATGTCAATAGAGGAATACCGTTAATAAAAAGGAGACTTCAACAGAAGAAGGTCCTTCTAGTTCTTGATAATGTCGACAAATTAGAGCAGTTAAAGGCACTTGCAGGGGGATATGATTGGTTTGGCTCTGGAAGTATAATCATCATCACCACAAGAGACAAGCACTTGCTAGATGCTCATGGGGTGGTAAACTTATATGAGGTTAAACCATTACATGTTGAAAAAGCTCTGGAATTGTTTAACTGGCATGCCTTCAGAAGTGATAAAGTTGGTCCACCATACATGAGTATTTCCAACCGTGCCGTTTCTTATGCGTGCGGTCTTCCTTTGGCTCTGGAAGTTATAGGATCCCACTTATTCGGAAAAAGTTTAGATGAGTGCCATTCTGCATTAGATAAATATGAAAGTATTCCTCATCGAAAGATTCATGAAATACTAAAAGTAAGCTACGATGGTTTGGAAGAAAATGAGAAGGGAATTTTCCTAGACATTGCATGTTTCTTCAATAACTGTGAACTGGGCAATGTCACACCAATGCTAAAAGCTCATGGTTTTTATGCAGAAGATGGTTTGAGAGTGTTAGCTGACAGATCTCTCATAAAGATTAATTCTTCTGATTTTGTGAGAATGCATGACCTAATTCGAGACACAGGTAGAGAGATTGTAAGGCAGGAATCAACACTTGAGCCAGGCAGACGTAGTAGATTATGGTTTAACCAGGACATTGTTCACGTTTTGGAAGGAAATACGCTTGAAGGGTACAACAACATACAAGTGCAATGGAATGGAAAAGCCTTAAAGAAAATGAAGAACTTGAGGATTTTGATAGTTGAAGATGCAACCTTTTCTACAAGCCCCGAGCATCTACCAAATAGCTTGAGAGTGCTAGACTGGAGTTGCTATCCTTCGCCATCTTTACCTTCTGATTTCAATCCAAAACGTTTTGAGATAATCCTTATGCCTGAAAGTAGCCTTCTGATGTTCGAACCACAAAAGATGTTGGAATCATTGTCTATAATAAACCTTGAAGATTGCAAGTTCTTAACTAATCTACCGAGCCTACGAGAGGCATCACTCTTAACAACTCTGCGTCTCGATAGATGCTGTAATTTAGTTAACATTGATGAATCAATTGGGTTTCTTGATAAGCTTCGGTTGTTGAGTGCTAAAGGGTGCACCAAGCTGAAAACTCTTGCACCCCGCATCATGTTGACATCTCTTGAAACTTTGGATCTTGCGATGTGCTATAATCTTGAGAGTTTCCCAGAAGTATTGGGAAAGATGGAGAAAATAAAGACAATATATTTAGACGACACAGACATAGAGAAATTGCCATTTTCAATTGGAAATTTTGTTGGGCTGGAACTATTGTCCTTGAAGGGATGCGAAAGGCTTCATCAGTTACCAGGTAGTATATGCATGATGCCGAAAGTTAGAGTGGTAATTGGTTATGGGCATGAAACATATAATTTTTTTGAAAAAGAGTTGAGCTCAGACGTGTCTCCAATGGCAATGCTTATTGGTGGTTCTAACCTATATCTTGATGTGTATTATCCATACATGAATCCCAATAATGGCATCCAGGTATGCAGTCCTAATCCTCTTATGCATTCTGATTTCAATTTGTTATTCTCAAAGCTCAGGAGGGAAGAAGACTGGTATCGCAGATGCAGGGTATCAGTGATGCATTTCTCGTTTCGAAAGAAATTTCCTAAGATAGCGCTATGTTGTTCATTATTTTTTCCTGCGATGAAAAGAGTCATGATAATGACTTTTAATTTCAGAGTATACATTAATGATACTTTGCAATTCAGTGGTATGTGCAATTTCATGTTTAGAGGGTATGAAAAAATACTTTGGTGTGATCTAGAAGGGAAAGTGGAGAGGGTGTTTTCAGAGCAAGAGTGGAACAGAGCTGAGATTGCGTTTGAGTTGGACTTCCCTATGCGAAGAAATACTAGAAATGGAATCACAACAAATAGCATTGGTAGAGGAAATCTAAGTTGGAGCCTAATTGGTGTGTACGAGGAAGGAAATAATAAAGAGGATATAGAATTTGAAGATCCCATGTCAATTTTTCCATTAAGTAACACACAACCTCTTTCTTCATTATCTAGTTCTTTGCACTATGTTGTTAGTCTAGGATTTCGTCAAGGATGGGTGGATATGGATTAA 3027 0.3882 MARRISLSLSSSTHTWIYDVFLSFRGEDTRFQFTHNLYHSLCEAGIHTFIDQEGLRIGEEITPVLFHAIQNSRISIIVFSKSYASSTYCLNELVRILECAKEEGPSIYPIFYDVDPSEVRHQTGTYAEALSKLETRFHNDADNEKVQKWRKALHEAANLSGWHYQHGSQPEYEFIRKIVQAISRKINYIPLYVADNPIGLEYALEGVKSLLEDGSEINMIGIYGIGGIGKTTIARAVYNNIFWGFQGSCFLPDIREKAINKHGIVQLQELVLSEILKEKDIKVGDVNRGIPLIKRRLQQKKVLLVLDNVDKLEQLKALAGGYDWFGSGSIIIITTRDKHLLDAHGVVNLYEVKPLHVEKALELFNWHAFRSDKVGPPYMSISNRAVSYACGLPLALEVIGSHLFGKSLDECHSALDKYESIPHRKIHEILKVSYDGLEENEKGIFLDIACFFNNCELGNVTPMLKAHGFYAEDGLRVLADRSLIKINSSDFVRMHDLIRDTGREIVRQESTLEPGRRSRLWFNQDIVHVLEGNTLEGYNNIQVQWNGKALKKMKNLRILIVEDATFSTSPEHLPNSLRVLDWSCYPSPSLPSDFNPKRFEIILMPESSLLMFEPQKMLESLSIINLEDCKFLTNLPSLREASLLTTLRLDRCCNLVNIDESIGFLDKLRLLSAKGCTKLKTLAPRIMLTSLETLDLAMCYNLESFPEVLGKMEKIKTIYLDDTDIEKLPFSIGNFVGLELLSLKGCERLHQLPGSICMMPKVRVVIGYGHETYNFFEKELSSDVSPMAMLIGGSNLYLDVYYPYMNPNNGIQVCSPNPLMHSDFNLLFSKLRREEDWYRRCRVSVMHFSFRKKFPKIALCCSLFFPAMKRVMIMTFNFRVYINDTLQFSGMCNFMFRGYEKILWCDLEGKVERVFSEQEWNRAEIAFELDFPMRRNTRNGITTNSIGRGNLSWSLIGVYEEGNNKEDIEFEDPMSIFPLSNTQPLSSLSSSLHYVVSLGFRQGWVDMD 1008
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g01769 1008 Gene3D - 191 347 IPR027417 -
Viun4g01769 1008 ProSiteProfiles TIR domain profile. 16 182 IPR000157 GO:0007165
Viun4g01769 1008 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 185 448 IPR027417 -
Viun4g01769 1008 SUPERFAMILY L domain-like 535 765 - -
Viun4g01769 1008 FunFam Disease resistance protein (TIR-NBS-LRR class) 14 188 - -
Viun4g01769 1008 Pfam TIR domain 18 187 IPR000157 GO:0007165
Viun4g01769 1008 SUPERFAMILY Toll/Interleukin receptor TIR domain 10 162 IPR035897 -
Viun4g01769 1008 SUPERFAMILY "Winged helix" DNA-binding domain 425 531 IPR036390 -
Viun4g01769 1008 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 18 768 IPR044974 GO:0006952
Viun4g01769 1008 PRINTS Disease resistance protein signature 296 310 - -
Viun4g01769 1008 PRINTS Disease resistance protein signature 389 403 - -
Viun4g01769 1008 PRINTS Disease resistance protein signature 219 234 - -
Viun4g01769 1008 PRINTS Disease resistance protein signature 686 702 - -
Viun4g01769 1008 Pfam NB-ARC domain 202 420 IPR002182 GO:0043531
Viun4g01769 1008 Gene3D - 11 190 IPR035897 -
Viun4g01769 1008 Gene3D Ribonuclease Inhibitor 528 790 IPR032675 -
Viun4g01769 1008 Gene3D - 355 438 IPR042197 -
Viun4g01769 1008 SMART till_3 17 159 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g01769 Viun-Chr4 31719619 31723363 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun4g01769 18 756 WRKY Transcription Factor Family AT4G12020 32.944 2.40e-87 306
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g01769 - - gmx:100797941 1302.35