Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g01763 ATGGCACAAAGAATCTCATCATCATTGTCTTCCCCCAGGCGTACATGGATTTATGATGTCTTTCTAAGTTTTAGGGGTGAAGACACTCGTTTCCAGTTTACTAATAATCTTTACCATTCCTTGTGCCAAAAGGGGATCCGTACTTTCATCGACCAGGATGGTCTTAGAAGAGGGGAAGAAATTACACCCGCTCTTTTCCACGCAATTCAAAATTCAATGATTTCCATCGTTGTCTTCTCCGAAAGCTATGCATCTTCAACCTATTGCTTAAATGAACTTGTAAAGATCCTTGAAGGCGCCAAGGAAGAAGGTCGATCCATTTATCCAATATTTTATGGAGTGGATCCATCAGAAGTTCGACATCATACTGGAACTTATGCAGAAGCACTGTCAAAACACGAAGCTAAGTTCCACAACGACGCTGACACCGAGAAGGTACAAAAATGGAGGAAGGCTTTACATGAAGCAGCTAATCTATCAGGCTGGCATTGCAAATATTGGTATCAACCAGAATATGAGTTTATCAGAAAGATTGTTGAAGAGATATCTGAAAAGATAAATTACATCCCTTTACATGTTGCTGATAATCCAATTGGGCTGGAGTATGCAGTGAAAGGAGTGAAATCTCTCCTCGGAGATGGGTCGGATGTCAACATGATAGGAATTTATGGTATCGGGGGTATTGGTAAAACCACCACTGCTCGTGCTGTCTATAACATTATTTTTTGGCATTATGAAGGTTCGTGTTTTCTACCTGACATTAGAGAAAAGGCAGTTAATAAGAACGAGATTGTCCAACTCCAAGAAATACTACTTTCTCAGATTCTCAAGGGGGAAGATATCAAAGTGGGAGATGTCAATAGAGGAATACCATTAATAAAACAGAGACTTCAACAGAAGAAGGTCCTTCTAGTTCTTGATGATGTTGACAAATTAAAGCAGTTAAAGGCACTTGCTGGGGGATGTGATTGGTTTGGCTCTGGAAGTATAATCATCATCACTACAAGAGACAAGCACTTGCTAGATGCTCATGGGGTGGTTAACTTATATGAGGTTAAACCATTACATTTTGAAAAAGCTTTGGAATTGTTTAACTTGCATGCCTTCAGAAGTGGTAAAGTTGGTCCACCATACATGAGTATTTCCAAGCGTGCAGTTTCTTACGCGTGTGGCCTTCCGTTGGCTCTGGAAGTTATAGGATCCCACTTATTTGGAAAAAGCTTAGATGAGTGCAATTCTGCATTAGATAAATATGAAAGTATTCCTCATCAGAAGATTCATGAAATACTAAAAGTAAGCTATGATGGTTTGGAAGAAAATGAGAAGGGAATTTTCCTAGACATTGCTTGTTTCTTCAATACCTATGAACTGGGCAATGTCACACCAATGCTAAAAGCGCATGGCTTTCATGTAGAAGATGGTTTGAGAGTGCTGGTTGACAAATCTCTGATAAAGATTGATTCTTTTGGTTTTGTGAGGATTCATGACCTAATTCGAGACACAGGTAGAGAGATTGTAAGGCAGGAATCAACACTTGAGCCAGGAAGACGTAGTAGATTATGGTTTGACCAAGACATTGTTCATGTTTTGGAAGAAAATACGGGATCTGATAGAATAGAATTCATAAAGCTTGAAGAGTACAACAACGTACAGGTGCAATGGGATGGAAAAGCCTTCAAGGAAATGAAGAACTTGAAAATTTTGATAATTGAAGATGCAACCTTTTCTGTAGGCCCCGAGCATCTACCAAATAGCTGA 1758 0.3942 MAQRISSSLSSPRRTWIYDVFLSFRGEDTRFQFTNNLYHSLCQKGIRTFIDQDGLRRGEEITPALFHAIQNSMISIVVFSESYASSTYCLNELVKILEGAKEEGRSIYPIFYGVDPSEVRHHTGTYAEALSKHEAKFHNDADTEKVQKWRKALHEAANLSGWHCKYWYQPEYEFIRKIVEEISEKINYIPLHVADNPIGLEYAVKGVKSLLGDGSDVNMIGIYGIGGIGKTTTARAVYNIIFWHYEGSCFLPDIREKAVNKNEIVQLQEILLSQILKGEDIKVGDVNRGIPLIKQRLQQKKVLLVLDDVDKLKQLKALAGGCDWFGSGSIIIITTRDKHLLDAHGVVNLYEVKPLHFEKALELFNLHAFRSGKVGPPYMSISKRAVSYACGLPLALEVIGSHLFGKSLDECNSALDKYESIPHQKIHEILKVSYDGLEENEKGIFLDIACFFNTYELGNVTPMLKAHGFHVEDGLRVLVDKSLIKIDSFGFVRIHDLIRDTGREIVRQESTLEPGRRSRLWFDQDIVHVLEENTGSDRIEFIKLEEYNNVQVQWDGKAFKEMKNLKILIIEDATFSVGPEHLPNS 585
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g01763 585 Gene3D - 355 438 IPR042197 -
Viun4g01763 585 PRINTS Disease resistance protein signature 389 403 - -
Viun4g01763 585 PRINTS Disease resistance protein signature 219 234 - -
Viun4g01763 585 PRINTS Disease resistance protein signature 296 310 - -
Viun4g01763 585 PRINTS Disease resistance protein signature 560 576 - -
Viun4g01763 585 SMART till_3 17 159 IPR000157 GO:0007165
Viun4g01763 585 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 18 584 IPR044974 GO:0006952
Viun4g01763 585 SUPERFAMILY "Winged helix" DNA-binding domain 425 531 IPR036390 -
Viun4g01763 585 Pfam NB-ARC domain 202 424 IPR002182 GO:0043531
Viun4g01763 585 Pfam TIR domain 18 187 IPR000157 GO:0007165
Viun4g01763 585 SUPERFAMILY Toll/Interleukin receptor TIR domain 10 162 IPR035897 -
Viun4g01763 585 FunFam Disease resistance protein (TIR-NBS-LRR class) 14 188 - -
Viun4g01763 585 Gene3D - 186 347 IPR027417 -
Viun4g01763 585 Gene3D - 15 185 IPR035897 -
Viun4g01763 585 ProSiteProfiles TIR domain profile. 16 186 IPR000157 GO:0007165
Viun4g01763 585 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 185 448 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g01763 Viun-Chr4 31651294 31654614 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun4g01763 18 584 WRKY Transcription Factor Family AT4G12020 32.933 1.52e-68 239
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g01763 - - pvu:PHAVU_004G046400g 942.954