LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Viun4g01740	ATGGCACGGAGAATCTCGTTATCCTTGTCTTCCTCCAGTCATACATGGATTTATGATGTCTTTCTAAGTTTTAGAGGTGAAGACACTCGTTATCAGTTTACTCATAATCTCTACCATTCCTTGTGCGAGAAGGGCATTCATACTTTCATTGACCAGGAGGGTCTTAGAAGAGGGGAAGAAATTACACCTGCTCTTTTCCACGCAATTCAAAATTCAAGGATTTCCATCGTTGTCTTCTCCAAAAACTATGCATCTTCAACTTATTGCTTAAATGAACTTGTAAAGATCCTTGAATGCGCCAAGGAAGAGGGTCGATCAATTTATCCAATATTTTATGGAGTTGATCCATCAGAAGTTCGACATCAGACTGGAAGTTATGGAGAAGCATTGTCAAAACACGAAGCTAGGTTCCATAATGATGCTGACAATGAGAAGACACAAAAGTGGAGGAAGGCTTTACATGAAGCAGCTAATCTATCAGGCTGGCATTTCCGACATGGGTCTCAACCAGAATTTGAGTTTATCAGAGAGATTGTTAAAGAGATCTCCGCAAAGATAAATTACATCCCGTTACATGTTGCTGATAAACCAATTGGGTTGGAGTATGCAGTCCAAGGAGTGAAATCTCTACTTGGAGAGGGGTCTGATGTCAACATGATAGGAATTTATGGTATCGGGGGTATAGGTAAAACCACCATTGCTCGTGCTCTGTATAACACTATTTTTTGGCACTATGATGGTTCGTGTTTTCTACCTGACATTAGAGAAAAGGCAGTTAATAAGCACGGGAATGTCCAACTTCAAGAAATACTACTTTCTCAGATACTCAAGGGAGAAGATATCAAAGTGGGAGATGTCAATAGAGGAATACCATTAATAAAAAGGAGACTTCAACAGAAGAAGGTCCTTCTAGTTCTTGATGATGTTGACAAATTAGAGCAGTTGAAGGCACTTGCTGGGGGATGTGATTGGTTTGGCTCTGGAAGTATTATCATCATCACCACAAGAGACAAGCACTTGCTAGATGCTCGTGGGGTGGTGAACTTATATGAAGTTAAACCATTAAAAGTTGAGAGAGCTTTGGAATTGTTTAGCTGGCATGCCTTCAAAAATGGTAAAGTTGATCCACCTTATATGAAAATTGCAATGCGTGCGGTTTCTTATGCGTGTGGCCTTCCGTTGGCTCTGGAAGTTATAGGATCCCAATTATTTGGAAAAAGTTTGGATGAGTGCAGTTCTGCATTAGACAAATATGAAGGTATTCCTCATGAAAAGATACAGGAGATACTTAAAGTAAGCTATAATAGTTTGGAAGAAAATGAAAAGGGGATTTTCCTAGACATTGCTTGTTTCTTCAATACCTATGAATTGAGCAATGTAACACCAATGCTAAAAGCTCATGGTTTTCATGTAGAAGATGGTTTGAGAGTGTTGGCTGACAGATCTCTCATAAAGATTGATTCTTCTGGTTTTGTAAGAATGCATGACCTAATTCGGGACACAGGAAGAGAAATTGTAAGGCAGGAATCAACACTTGAGCCAGGCAGACGTAGTAGATTATGGTTTGACGAAGATATTGTTCATGTTTTGGAAGAAAATACGGGATCTGATAAAATAGAATTCATAAAGCTTGAAGGGTACAACAACATACAAGTGCAATGGGATGGAAAAGCCTTCAAGGAAATGAAGAACTTGAGGATTTTGATCATTAAAGGTTCAAGCTTTTCTACAGTTCCCGAGCATCTACCAAATAGCTTGAGAGTGGTAGACTGGAGTTGCTATCCTTCGCCATCTTTACCTTCTGATTTCAATCCCAAACGCTTTGAGATACTCCTTATGCCTGAAAGTTCACTTCGGATGTTCAAACCACAAAAGATGATGGAATCATTATCTGTAATAAACCTTGAAGATTGCACGTTCTTAACTGATCTACGGAGCCTACGAGAGGCACCATTCTTAACAACTCTGCGTCTCGATAGATGTTCTAATTTGGTTAACATAGATGAATCAATTGGGTTTCTTGATAAACTTCGGTTATTGAGTGCTAAACACTGCACCAAGCTGAAAGCTCTTGCACCCTCCATCATGTTGACATCTCTTGAAACTTTGGATCTTTGGGGGAGCGAAAGTCTTGAGAGTTTCCCTGAAGTATTGGGAAAGATGGAGAAAATAAGGAAAGTATATTTAGACGGCACAGGCATAGAGAAATTGCCATTTTCTATTGGAAATTTTGTTTGGCTGGAACTATTGTCCTTGAAGGGATGTGAGAAGCTTCATCAGGTACCAGGTAGTATAAGCATAATGCCGAAAGTTAAAGTGGTAGTGGATTATGGGCATGAAGTATATCAAATTTTTGAAGAAGAGTTGAGCTCAGAGGTGTCTCCAAGGGCCATGCTTATTGGTGATTCTGACGTCTATCTTGATGTGTATAATTCACACCACGTATATCTTGACGTGTATTATTCATACGTAAGTCCCAATAATGTCATCCGAGTTTACCCTCCTAATCAGCTTTTGCATCAGCTTTTGCATTCTGATTTAAGATTGTTATTCTCAAAAATTCAACTGGAAGATGACCGGCTTTGGTTAAACCAGAAGAACTCAGAGATAAATATGTTCCGATTTAGAAACAAATTTCCTAAGGTAGCGCTATGTTGTTCAGTATTAGCACCTGCGTTGAAAAGTGTCGTAGTAATGAATTTGAAGTTCAGAGTACTCATTAACAATACTTTACAATTCAGTGCTCTGTGCAATTTCATTGTTGGAGGAGGGAGTAACACAATACTTTGGTGTGATCTAGAAGGCAAAGTGGATGAGGTGATTTGGAAAGTGGATGAGGTGATTTCAGAGCGAGAGTGGGATAAAGCTAAGATTTATTTTCAGTTAGACTTCCCTATGCAAAGAAATTGTGAAGATAAGAAAACAAAAAGGAGCATTGGTGGAGGAAGTCTAATTTGGAGCCTGATTGGTGTGTATGAGGAAGGAAACAATAAAGAGGATATTCGTGCTTACGATAACTGA	3021	0.3909	MARRISLSLSSSSHTWIYDVFLSFRGEDTRYQFTHNLYHSLCEKGIHTFIDQEGLRRGEEITPALFHAIQNSRISIVVFSKNYASSTYCLNELVKILECAKEEGRSIYPIFYGVDPSEVRHQTGSYGEALSKHEARFHNDADNEKTQKWRKALHEAANLSGWHFRHGSQPEFEFIREIVKEISAKINYIPLHVADKPIGLEYAVQGVKSLLGEGSDVNMIGIYGIGGIGKTTIARALYNTIFWHYDGSCFLPDIREKAVNKHGNVQLQEILLSQILKGEDIKVGDVNRGIPLIKRRLQQKKVLLVLDDVDKLEQLKALAGGCDWFGSGSIIIITTRDKHLLDARGVVNLYEVKPLKVERALELFSWHAFKNGKVDPPYMKIAMRAVSYACGLPLALEVIGSQLFGKSLDECSSALDKYEGIPHEKIQEILKVSYNSLEENEKGIFLDIACFFNTYELSNVTPMLKAHGFHVEDGLRVLADRSLIKIDSSGFVRMHDLIRDTGREIVRQESTLEPGRRSRLWFDEDIVHVLEENTGSDKIEFIKLEGYNNIQVQWDGKAFKEMKNLRILIIKGSSFSTVPEHLPNSLRVVDWSCYPSPSLPSDFNPKRFEILLMPESSLRMFKPQKMMESLSVINLEDCTFLTDLRSLREAPFLTTLRLDRCSNLVNIDESIGFLDKLRLLSAKHCTKLKALAPSIMLTSLETLDLWGSESLESFPEVLGKMEKIRKVYLDGTGIEKLPFSIGNFVWLELLSLKGCEKLHQVPGSISIMPKVKVVVDYGHEVYQIFEEELSSEVSPRAMLIGDSDVYLDVYNSHHVYLDVYYSYVSPNNVIRVYPPNQLLHQLLHSDLRLLFSKIQLEDDRLWLNQKNSEINMFRFRNKFPKVALCCSVLAPALKSVVVMNLKFRVLINNTLQFSALCNFIVGGGSNTILWCDLEGKVDEVIWKVDEVISEREWDKAKIYFQLDFPMQRNCEDKKTKRSIGGGSLIWSLIGVYEEGNNKEDIRAYDN	1006

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Viun4g01740	1006	SUPERFAMILY	L domain-like	544	913	-	-
	Viun4g01740	1006	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	186	448	IPR027417	-
	Viun4g01740	1006	Pfam	TIR domain	18	186	IPR000157	GO:0007165
	Viun4g01740	1006	SMART	till_3	17	159	IPR000157	GO:0007165
	Viun4g01740	1006	Gene3D	-	187	347	IPR027417	-
	Viun4g01740	1006	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	18	784	IPR044974	GO:0006952
	Viun4g01740	1006	Gene3D	-	10	186	IPR035897	-
	Viun4g01740	1006	SUPERFAMILY	"Winged helix" DNA-binding domain	425	531	IPR036390	-
	Viun4g01740	1006	Gene3D	Ribonuclease Inhibitor	537	694	IPR032675	-
	Viun4g01740	1006	Gene3D	Ribonuclease Inhibitor	695	783	IPR032675	-
	Viun4g01740	1006	Pfam	NB-ARC domain	201	436	IPR002182	GO:0043531
	Viun4g01740	1006	Gene3D	-	355	438	IPR042197	-
	Viun4g01740	1006	PRINTS	Disease resistance protein signature	219	234	-	-
	Viun4g01740	1006	PRINTS	Disease resistance protein signature	296	310	-	-
	Viun4g01740	1006	PRINTS	Disease resistance protein signature	389	403	-	-
	Viun4g01740	1006	PRINTS	Disease resistance protein signature	695	711	-	-
	Viun4g01740	1006	ProSiteProfiles	TIR domain profile.	16	186	IPR000157	GO:0007165
	Viun4g01740	1006	FunFam	Disease resistance protein (TIR-NBS-LRR class)	14	188	-	-
	Viun4g01740	1006	SUPERFAMILY	Toll/Interleukin receptor TIR domain	10	162	IPR035897	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Viun4g01740	Viun-Chr4	31455515	31459248	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Viun4g01740	18	765	WRKY Transcription Factor Family	AT4G12020	33.333	6.50e-94	326

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Viun4g01740	-		-	pvu:PHAVU_004G046400g	1275