Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g01737 ATGGCGGGAGCTACAGGAAGAACCCTCTTCACCTTCTCCCTCTCTTCCTCTTCTTCTTATTCTTCATTCACGCGCTTCCTCGCCAAGCGCGTCCCACTACGCAAACCCCTCCCACTTCTCCCCCGCCTCCGCCCACTCTGCTCCGTCGCTGCTGCGCCGGAAACCGCCGACGCGAAGCATTCTTTACTCCTGGAGAGGCTCCGGGCGCGACACCTCAGGGATGCCGCGAGACGCCCCGAACCGAGGAAGAAGGCCAGGGGCGCCGCCTTTGCTGAGGCTGAGAAAGAGAGGGCGAAGAAGGAGAAGAAGGTGGTTGCCAGTTTCGAGGAGTTGGGAATGAGTGAGGAAGTTATGGGGGCGGTTAGGGAAATGAGCATCGAAGTACCCACTGAGATACAGGGAATTGGCATCCCCGCCGTTTTGGAAGAGAAGAGTGTCGTTTTGGGGTCGCATACTGGCTCTGGCAAAACTCTCGCCTACTTGCTTCCTCTTGTTCAGTTACTAAGACGGGATGAACAATTGAATGGAATAATGTTGAAGCCCAGGCGTCCACGAGCTGTTGTGCTGTGTCCTACAAGGGAGTTATCTGAGCAGGTTTTTCGAGTAGCAAAATCGATAAGCCATCATGCACGATTTAGGTGCACCATGGTAAGTGGTGGTGGCCGGATTAGGCCTCAGGAGGATTCCCTTAACAACCCCATTGATATGGTAGTTGGTACCCCTGGTAGGGTTCTTCAGCATATTGATGAGGGAAACATGGTGTATGGTGAGATCAAATACTTGGTATTGGATGAGGCAGACACAATGTTTGATCGGGGTTTTGGTCCTGATATACGCAAGTTTCTGGGCCCGCTAAAAAGTCGTGCTTCAAAACCTGATGGCCTTGGTTTTCAGACTATCTTGGTAACTGCAACCATGACAAAGGCTGTGCAAAAGCTGATTGATGAGGAGTTTCAAGGCATTGTTCATCTGCGCACATCAACATTGCATAAAAAAATTTCTTCTGCTCGTCATGATTTTATTAGACTTTCAGGTTCTGAGAACAAGCTCGAAGCATTACTGCAGGTACTAGAACCAACCCTTGCAAAGGGTAACAGGGTGATGGTTTTCTGCAATACATTGGATTCTAGTCGTGCTGTGGATCATTTTCTTGGTGAAAATCAGATTTCTACTGTGAACTACCATGGTGAGGTACCAGCAGAGCAAAGGGTTGAAAATCTCAGAAAGTTCAAGAGTGATGGTGATGATTGTCCTACGTTGGTTTGCACGGACCTGGCTGCTAGGGGTCTAGACTTGGATGTAGATCATGTTGTCATGTTTGACTTCCCCTTGAATTCTATTGACTACCTTCATCGCACAGGTAGAACTGCTCGTATGGGTGCAAAAGGGAAGGTAACAAGTTTAGTTGCTAAGAAGGACTTGGACTTGGCCAGCAAAATAGAGGAAGCAATAAGGAAGAATGAGAGTTTGGAGGCTATCACAAAAGAAAGTGTTCGAAGGGACACTGCAAGGACCCAAAACACAGAGCAGAAGGGAAAGGGTAGAAAAATGGTTCAAGTTTCAAAAGTCAAGGGCAAATTTGGTAGTCGTTCCAGTTCTGGAAATAATAGATCAGGTATAAAATCTGGGAAAGCTTCACCAGTCAAATCTATGAAAAAAGGGATTAACGTTTCAAAATCTGGAAAATCTTCTAGTGCAAGTAGCACCATCAGAAAAGGATCTTCAGAAAGGAGGCAAACAACTAAAGTGGTCAGTGCCACCAAATCTACGAATTCTAAACTTAATGTTGTGGGGTTTCGGGGAAAAAACTCATCTTCAAATAACAATGGTTCGGTTTTGTGA 1842 0.4696 MAGATGRTLFTFSLSSSSSYSSFTRFLAKRVPLRKPLPLLPRLRPLCSVAAAPETADAKHSLLLERLRARHLRDAARRPEPRKKARGAAFAEAEKERAKKEKKVVASFEELGMSEEVMGAVREMSIEVPTEIQGIGIPAVLEEKSVVLGSHTGSGKTLAYLLPLVQLLRRDEQLNGIMLKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRCTMVSGGGRIRPQEDSLNNPIDMVVGTPGRVLQHIDEGNMVYGEIKYLVLDEADTMFDRGFGPDIRKFLGPLKSRASKPDGLGFQTILVTATMTKAVQKLIDEEFQGIVHLRTSTLHKKISSARHDFIRLSGSENKLEALLQVLEPTLAKGNRVMVFCNTLDSSRAVDHFLGENQISTVNYHGEVPAEQRVENLRKFKSDGDDCPTLVCTDLAARGLDLDVDHVVMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDLDLASKIEEAIRKNESLEAITKESVRRDTARTQNTEQKGKGRKMVQVSKVKGKFGSRSSSGNNRSGIKSGKASPVKSMKKGINVSKSGKSSSASSTIRKGSSERRQTTKVVSATKSTNSKLNVVGFRGKNSSSNNNGSVL 613
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g01737 613 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 60 497 - -
Viun4g01737 613 SMART helicmild6 378 460 IPR001650 -
Viun4g01737 613 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 137 324 IPR014001 -
Viun4g01737 613 Pfam DEAD/DEAH box helicase 130 313 IPR011545 GO:0003676|GO:0005524
Viun4g01737 613 Gene3D - 330 564 IPR027417 -
Viun4g01737 613 CDD SF2_C_DEAD 337 469 - -
Viun4g01737 613 MobiDBLite consensus disorder prediction 495 511 - -
Viun4g01737 613 Pfam Helicase conserved C-terminal domain 349 460 IPR001650 -
Viun4g01737 613 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 106 134 IPR014014 GO:0003724
Viun4g01737 613 SMART ultradead3 125 334 IPR014001 -
Viun4g01737 613 Gene3D - 73 325 IPR027417 -
Viun4g01737 613 MobiDBLite consensus disorder prediction 525 543 - -
Viun4g01737 613 MobiDBLite consensus disorder prediction 594 613 - -
Viun4g01737 613 MobiDBLite consensus disorder prediction 75 94 - -
Viun4g01737 613 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 183 480 IPR027417 -
Viun4g01737 613 MobiDBLite consensus disorder prediction 556 589 - -
Viun4g01737 613 MobiDBLite consensus disorder prediction 495 589 - -
Viun4g01737 613 CDD DEADc 117 316 - -
Viun4g01737 613 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 349 499 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g01737 Viun-Chr4 31415382 31422235 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun4g01737 105 482 Eukaryotic Initiation Factors Gene Family AT3G19760 28.052 2.01e-40 150
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g01737 - - gmx:100805709 889.797