Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g01723 ATGAGAGGAAGACGCAGAGTGCTTCTTAGCCTCTCTTTTTCTCTGCTTTCACACGTAAAGCACAAGCTTTTATCAAAATCAACACCACCCACTTCTTTATTTCGAAGTAGAATCACATTCTCAACTTCTTCCTCCTCCATAGACCCTCCTATTGAAGAATCAAAGACTTCATCGTCCAAGTCCCAAAGGGATGCACTGATTTTGGAACAGTTCAAGCAAAGAAAACTCAAAGGGTCCCCAAAAGACGCCAAGGGTACCCCTCAAGGGGGTTCAACTTCAGTTCCATTAAGTTCAGATGCTTATACTGAGAAAGTGGTCCAAAAGGGTGTGCAGAATGAGGAAGAACCCACCATGGTTGTTAGAAGTTTCAAGGAGTTGGGTGTGAGTGATGAGCTTGTTGAGGTAATGGAGGAGATTGGAGGGTTTATTCCCAGTGAGATACAGTGTGTGGTTATTCCTGTTATCTTGGAAGGGAAGAGTGTGTTGCTGAGTTCACCATCTGAACCTGACAGAACTTTGGCCTTCTTGTTGCCCCTTATTCAGTTGCTAAGACGGGATAGAGAGTTGCTTGGTTCAAATTCAAAACATCCACAAGCCATCGTGCTTTGTGCTACGGAGGAGAAAGCCACACAGTGCTTCAATGCTGCAACATATATCATCCATAACACAAAATTGAAGTCTGCAAAGGATTGTGCTTCACCAGATAATGGGCAGTCGCAAGCCTCTATTGGCCTAATGATTGGAACTCCCTGTGAGATTCTTCAATATGTTGAAGAGGGGAGCGTTGTTCCTTCTGAAATAAGATACTTGGTGTTGGATGAGGCAGATTGCATGCTTGGTAGTGGCCTTGATCCTGAAATCCATAAAATTCTCAGACCAATACAAGATCATGAATCAAAATCTGATGTCAAAAGATTACAAACTATTTTGGCCATTTCAACCATGGCTGAGGTTTTGGGTGAACAATCCCCCATTGTAAAGCATCTTGAGTGCCATCATGCAGGAAATATTTCTGCAATGTCTTTAGAAATGGATCAAACAGAAGTCTTTCATTTCACAGAGTCTCTTCATGCTCTTAAGAAAAAAGTGGCAGAGGCCATGGACTCCCTTTTGCAACAAGAATAA 1125 0.4258 MRGRRRVLLSLSFSLLSHVKHKLLSKSTPPTSLFRSRITFSTSSSSIDPPIEESKTSSSKSQRDALILEQFKQRKLKGSPKDAKGTPQGGSTSVPLSSDAYTEKVVQKGVQNEEEPTMVVRSFKELGVSDELVEVMEEIGGFIPSEIQCVVIPVILEGKSVLLSSPSEPDRTLAFLLPLIQLLRRDRELLGSNSKHPQAIVLCATEEKATQCFNAATYIIHNTKLKSAKDCASPDNGQSQASIGLMIGTPCEILQYVEEGSVVPSEIRYLVLDEADCMLGSGLDPEIHKILRPIQDHESKSDVKRLQTILAISTMAEVLGEQSPIVKHLECHHAGNISAMSLEMDQTEVFHFTESLHALKKKVAEAMDSLLQQE 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g01723 374 SMART ultradead3 140 323 IPR014001 -
Viun4g01723 374 Gene3D - 97 320 IPR027417 -
Viun4g01723 374 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 259 374 IPR002004 GO:0003723
Viun4g01723 374 MobiDBLite consensus disorder prediction 42 63 - -
Viun4g01723 374 SMART poly_2 311 373 IPR002004 GO:0003723
Viun4g01723 374 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 152 333 IPR014001 -
Viun4g01723 374 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 121 149 IPR014014 GO:0003724
Viun4g01723 374 Pfam Poly-adenylate binding protein, unique domain 324 368 IPR002004 GO:0003723
Viun4g01723 374 Gene3D - 321 373 - -
Viun4g01723 374 SUPERFAMILY PABC (PABP) domain 315 369 IPR036053 GO:0003723
Viun4g01723 374 MobiDBLite consensus disorder prediction 75 98 - -
Viun4g01723 374 Pfam DEAD/DEAH box helicase 146 314 IPR011545 GO:0003676|GO:0005524
Viun4g01723 374 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 114 315 IPR027417 -
Viun4g01723 374 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 56 316 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g01723 Viun-Chr4 31281372 31284002 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun4g01723 120 292 Eukaryotic Initiation Factors Gene Family AT3G19760 24.294 4.04e-10 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g01723 - - vra:106768009 608.601