Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g01719 ATGGCGGCGGTGATTTCTTCTGCTCCGATGGCGGTTCCAGCCACAGCGTTGAATGGTGCGCAATTCGGGAATGCCTCTCTGTATGTCGGGGATCTCGACGCCAATGTGATAGAGAGTCAGTTGTTTGATCTGTTCAGTCAAGTGGCTCAAGTGGTTTCGATTAGGGTTTGCAGGGATCAGACTAGGCGAACCTCTCTCGGCTATGCATATGTCAATTTCGCCAATGTTCAAGATGCTGCTATTGCCATGGAACATTTGAACTTCACTCCTCTGAATGGAAAACCCATTCGGATTATGTTTTCTCACCGTGACCCCAGCATTAGGAAAAGCGGATTCGCAAATGTGTTCATCAAGAATCTTGATGCATCAGTGGATAACAAGGCACTGTATGATACTTTTGCTGCCTTTGGAAATGTGCTATCTAGCAAGGTACAGGTTGATGAGAATGGTCAATCAAAAGGGTATGGATTTGTGCAATTTGACAATGACGAGTCTGCTCAGAATGCTATCAAGAAACTGAACGGCATGTTGATAAATGATAAGAAGGTGTATGTTGGGCTTTTTGTTCGGCGTCAAGAAAGGGCTCCGGGGAACGATGGATCACCAAAGTTCACCAATGTGTATGTGAAAAACCTTTCTGAAACATACACTGAGGAAGACCTTAAGCAACTCTTCAGTACCTATGGCACTATAACCAGTGTTGTGGTCATGAAAGATGCAGAGGGGAAGTCCAGGTGTTTTGGTTTTGTGAATTTTGAGAGTGCAGATTCTGCAGCCACTGCTGTTGAGAGGCTAAATGGAACCACAATCAACAATGACAAGGTTTTGTATGTAGGGAGGGCTCAGAGGAAGGCCGAAAGAGAGGCAGAGTTGAAAGCCAAATTTGAACAGGAAAAAAGAAATAAATTTGACAAACTTCAAGGTGCTAACTTGTATCTGAAAAACTTTGATGACAGTTTTAATGATGAAAAGTTGAAAGAGATTTTTTCTGTGTTTGGAACAACGACGTCTTGTAAGGTAATGATGGACGCTCTTGGTCGTAGCAAAGGTTGTGGTTTCGTTGCATTCTCTACTCCGGAGGAAGCCACTAGAGCCATGAATGAAATGAATGGGAAGATAATTGGACAAAAGCCTCTGTATGTTGCAGTAGCCCAGCGAAAGGAAGAAAGGAAGGCTAATTTACAGGCTCAGTTTTCTCATATGCAAATTGCACCTTTCTCTGCTGGCATCACTGGATATCATCCAGCATATTTTGGTCCAGGAACAACTGGGTTTGTTTCACCTCAGGCAACAGGCTATGGTTTTCAACCTCAAGTGTTGCCACAAAGCATGCGTGGGGTTCCTCCAAATTTCATGATGCCATACCCCCTCCAGAGGCAGGGTCCTCCTGGACAAAGGATGGTTCCTCCTACACGAAGGGTGGGAAATGTAACTCTCAACCATTCACTTCCAATACCAAATGTTCAAAATGGCATGCATCAATATGTAATGCCCCATCATCTGGTGAGTCCGGTTGCCATTACTGCACCTCCTACTGATGTCAAGACTTCTGCTACATCATCTACTACACTTGCTTCAGCTTTGGCTTCTGCTAGTCCGGAGAATCAACATAGGATGCTGGGTGAACATTTATATCCACTGGTGGAACGTCTTACTCCAAGTAACCAGACTGCAAAAGTCACAGGAATGTTGCTGGAAATGGATCAAGCTGAAGTGATTCATCTTATTGAATCTCCTGAGGATTTGAAGACAAAGGTGTCCGAGGCAATGAAGGTGCTTCATGAGGCAGCAGCAGGTTCTGAAGTTGGTGATCAAACTAAAGTGATATAA 1830 0.4421 MAAVISSAPMAVPATALNGAQFGNASLYVGDLDANVIESQLFDLFSQVAQVVSIRVCRDQTRRTSLGYAYVNFANVQDAAIAMEHLNFTPLNGKPIRIMFSHRDPSIRKSGFANVFIKNLDASVDNKALYDTFAAFGNVLSSKVQVDENGQSKGYGFVQFDNDESAQNAIKKLNGMLINDKKVYVGLFVRRQERAPGNDGSPKFTNVYVKNLSETYTEEDLKQLFSTYGTITSVVVMKDAEGKSRCFGFVNFESADSAATAVERLNGTTINNDKVLYVGRAQRKAEREAELKAKFEQEKRNKFDKLQGANLYLKNFDDSFNDEKLKEIFSVFGTTTSCKVMMDALGRSKGCGFVAFSTPEEATRAMNEMNGKIIGQKPLYVAVAQRKEERKANLQAQFSHMQIAPFSAGITGYHPAYFGPGTTGFVSPQATGYGFQPQVLPQSMRGVPPNFMMPYPLQRQGPPGQRMVPPTRRVGNVTLNHSLPIPNVQNGMHQYVMPHHLVSPVAITAPPTDVKTSATSSTTLASALASASPENQHRMLGEHLYPLVERLTPSNQTAKVTGMLLEMDQAEVIHLIESPEDLKTKVSEAMKVLHEAAAGSEVGDQTKVI 609
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g01719 609 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 205 283 IPR000504 GO:0003723
Viun4g01719 609 Gene3D - 19 112 IPR012677 -
Viun4g01719 609 Gene3D - 113 187 IPR012677 -
Viun4g01719 609 FunFam Polyadenylate-binding protein 292 397 - -
Viun4g01719 609 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 520 598 IPR002004 GO:0003723
Viun4g01719 609 SMART poly_2 532 596 IPR002004 GO:0003723
Viun4g01719 609 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 113 190 IPR000504 GO:0003723
Viun4g01719 609 FunFam Polyadenylate-binding protein 111 194 - -
Viun4g01719 609 Gene3D - 517 598 - -
Viun4g01719 609 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 207 274 IPR000504 GO:0003723
Viun4g01719 609 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 115 183 IPR000504 GO:0003723
Viun4g01719 609 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 27 97 IPR000504 GO:0003723
Viun4g01719 609 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 311 379 IPR000504 GO:0003723
Viun4g01719 609 Coils Coil 278 301 - -
Viun4g01719 609 SMART rrm1_1 206 279 IPR000504 GO:0003723
Viun4g01719 609 SMART rrm1_1 114 186 IPR000504 GO:0003723
Viun4g01719 609 SMART rrm1_1 310 382 IPR000504 GO:0003723
Viun4g01719 609 SMART rrm1_1 26 99 IPR000504 GO:0003723
Viun4g01719 609 Coils Coil 384 404 - -
Viun4g01719 609 FunFam Polyadenylate-binding protein 196 291 - -
Viun4g01719 609 Gene3D - 189 289 IPR012677 -
Viun4g01719 609 CDD RRM2_I_PABPs 111 186 IPR045305 -
Viun4g01719 609 CDD RRM3_I_PABPs 204 284 - -
Viun4g01719 609 Pfam Poly-adenylate binding protein, unique domain 528 593 IPR002004 GO:0003723
Viun4g01719 609 CDD RRM4_I_PABPs 308 386 - -
Viun4g01719 609 SUPERFAMILY RNA-binding domain, RBD 25 193 IPR035979 GO:0003676
Viun4g01719 609 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 309 386 IPR000504 GO:0003723
Viun4g01719 609 SMART rrm2_1 206 278 IPR003954 GO:0003676
Viun4g01719 609 SMART rrm2_1 26 99 IPR003954 GO:0003676
Viun4g01719 609 SMART rrm2_1 310 382 IPR003954 GO:0003676
Viun4g01719 609 SMART rrm2_1 114 186 IPR003954 GO:0003676
Viun4g01719 609 FunFam Polyadenylate-binding protein 18 110 - -
Viun4g01719 609 NCBIfam polyadenylate binding protein, human types 1, 2, 3, 4 family 25 593 IPR006515 GO:0003723
Viun4g01719 609 FunFam Polyadenylate-binding protein 516 599 - -
Viun4g01719 609 PANTHER RNA BINDING PROTEIN 25 87 - -
Viun4g01719 609 SUPERFAMILY PABC (PABP) domain 458 598 IPR036053 GO:0003723
Viun4g01719 609 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 25 103 IPR000504 GO:0003723
Viun4g01719 609 Gene3D - 290 395 IPR012677 -
Viun4g01719 609 SUPERFAMILY RNA-binding domain, RBD 204 390 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g01719 Viun-Chr4 31216770 31220463 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun4g01719 24 605 Eukaryotic Initiation Factors Gene Family AT1G71770 55.698 0.0 642
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g01719 K13126 - gmx:100783163 829.706