Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g01715 ATGGATTTCTCTGAGGGTTATGTATCAAATGAGCATCGTGAGCTTCATCGATCTGCAGCAGAAAGTGCGGATCCTTTGTCTGTTTCTCCATTGCAACTTGCTCCAAAATCTTCAAGGTCCCCTGACTCTGCTAGGTCTCCAAAATCTCCGAGGTCCCCAAAGGTTCAAGGCAAGTGCAGCACTCTAAGTCCAAGAACTCATAAACAATCACATTCTCAAAAAGATGGACGTCCAAAGAAAGGTGGTTCTGGGGGAAAAGGTACCTGGGGTGGATTGCTTGATACAGATGACTCAAGCGTTATTGATCCTAATGATCCAAACTATGACAGCACTGAGGAATATGACCATTCAAATGAAAAGAAGCCGAACACAGAGCTTGATAGCTACAAGAAAAAGGCTACAGTAATAGTGGAGGAATATTTTGCCACTGATGATGTTGTTGCAACAATGAATGAAGTTAAAGAATTGGGGAAACCAGAGTATGGCTACTATTTTGTCAAGAAACTTGTCTCTATGTCCATGGACAGGCATGACAAAGAAAAAGAAATGGCTGCTATTCTGCTCTCTGCACTTTATGCTGACGTATTTGATCCTTCACAAGTTTACAAGGGCTTCAGCAAATTAGTTGAATCAACAGATGACTTGATTGTAGATATACCAGACGCAGTTGAAGTTCTAGCACTTTTCATAGCTAGGGCCGTGGTTGATGACATACTTCCTCCTGCATTTTTGAAGAAACAGATGGCCTACTTAGCGAAAGATTCAAAAGGGGTTGATGTGTTGAAAAAAACTGAGAAAAGCTATCTAGCAGCACCTCTTCATGCAGAAATCATAGAGAGATGCTGGAGAGGTAGTAAGAACACCACAGTGGATGATGTTAAAGCTAAGATAAACAACTTTTTGAAGGAGTATGTTGTAAGTGGTGACAAGAAAGAAGCCTTCAGATGCATCAAAGATCTGAAAGTTCCTTTCTTCCATCACGAAATAGTGAAACGGGCCCTTATAATGGCAATGGAGAGACGTCAAGCAGAATCCCCACTATTAGATCTCTTGAAGGAAGCAGCTGAAGAAGGTTTCATCAACACAAGCCAAATGTCCAAAGGCTTCAGTCGGTTAATTGACACAGTTGATGACTTATCACTTGACATACCAAACGCACGAGGAATACTGCAGAAGCTTATTTCCAAAGCAGCATCAGAGGGTTGGTTATGTGTGTCATCTTTGAAATCACTCTCAGTAGAGCCAGAAAGGAACGCAATACAAGATAGTGCTGCCAAAAGTTTCAAGGTAAAGACTCAGTCCATCATTCAAGAGTACTTCTTATCAGGTGATATATTGGAGGTAAATAGCTGTCTTGAGCAAGAAAACAGCAAGAACTGTGCTGCACTCAATGCAATCTTCGTTAAAAAACTGATAACTCTGGCAATGGATAGGAAAAATAGAGAGAAGGAAATGGCTTCTGTGTTGCTGTCATCTCTGTGTTTCCCAGCTGATGATGTTGTGAGTGGTTTTGTGATGTTGATAGAGTCAGCAGATGACACTGCTCTGGACAACCCTGTTGTTGTTGAGGATCTTGCTATGTTTCTAGCCAGAGCAGTGGTGGATGAAGTGCTAGCTCCACAACACCTTGAAGAGATTGGAGCACAATGTTTGGGGCCAGGTTCAATTGGGAGCAGAGTTCTTCAAATGACAAAGTCATTGCTAAAGGCTAGACTTGCAGGGGAGAGAATCTTGAGGTGTTGGGGTGGTGGGGGAAGTAGCAGGCCTGGATGGGCTTTTGAGGATGTCAAAGACATGATTGGGAAGCTGTTGGAAGAGTATGAGTCTGGAGGGGAAATAAAGGAGGCATGTCGCTGCATGAAAGAGCTAGGAATGCCATTCTTCCACCATGAGGTTGTTAAGAAAGCTTTGGTGACAACCATTGAAAAGAAGAATGAGAGGTTGTGGGGTTTGCTCAAGGAGTGTTTTGAATCAGGACTCATAACCATGAATCAAATGGCCAAGGGTTTTGGAAGGGTTGCAGAATCTCTTGATGATTTGGCCTTAGATGTTCCTGATGCTAAAAACCAGTTTGCATACTATGTTGAAAGAGCAAAGACTAATGGATGGTTGGACAATTCATTTTGTTTCACCAAACAGGAACATGCAACAGAGAATGGCACTCACTAA 2169 0.4237 MDFSEGYVSNEHRELHRSAAESADPLSVSPLQLAPKSSRSPDSARSPKSPRSPKVQGKCSTLSPRTHKQSHSQKDGRPKKGGSGGKGTWGGLLDTDDSSVIDPNDPNYDSTEEYDHSNEKKPNTELDSYKKKATVIVEEYFATDDVVATMNEVKELGKPEYGYYFVKKLVSMSMDRHDKEKEMAAILLSALYADVFDPSQVYKGFSKLVESTDDLIVDIPDAVEVLALFIARAVVDDILPPAFLKKQMAYLAKDSKGVDVLKKTEKSYLAAPLHAEIIERCWRGSKNTTVDDVKAKINNFLKEYVVSGDKKEAFRCIKDLKVPFFHHEIVKRALIMAMERRQAESPLLDLLKEAAEEGFINTSQMSKGFSRLIDTVDDLSLDIPNARGILQKLISKAASEGWLCVSSLKSLSVEPERNAIQDSAAKSFKVKTQSIIQEYFLSGDILEVNSCLEQENSKNCAALNAIFVKKLITLAMDRKNREKEMASVLLSSLCFPADDVVSGFVMLIESADDTALDNPVVVEDLAMFLARAVVDEVLAPQHLEEIGAQCLGPGSIGSRVLQMTKSLLKARLAGERILRCWGGGGSSRPGWAFEDVKDMIGKLLEEYESGGEIKEACRCMKELGMPFFHHEVVKKALVTTIEKKNERLWGLLKECFESGLITMNQMAKGFGRVAESLDDLALDVPDAKNQFAYYVERAKTNGWLDNSFCFTKQEHATENGTH 722
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g01715 722 MobiDBLite consensus disorder prediction 109 125 - -
Viun4g01715 722 MobiDBLite consensus disorder prediction 1 20 - -
Viun4g01715 722 FunFam programmed cell death protein 4 118 271 - -
Viun4g01715 722 Gene3D - 116 267 - -
Viun4g01715 722 Gene3D - 416 571 - -
Viun4g01715 722 MobiDBLite consensus disorder prediction 1 125 - -
Viun4g01715 722 ProSiteProfiles MI domain profile. 128 249 IPR003891 -
Viun4g01715 722 PANTHER PROGRAMMED CELL DEATH 4 17 708 IPR039778 GO:0045892
Viun4g01715 722 SUPERFAMILY ARM repeat 425 585 IPR016024 -
Viun4g01715 722 Gene3D - 579 712 - -
Viun4g01715 722 Gene3D - 278 411 - -
Viun4g01715 722 SUPERFAMILY ARM repeat 592 710 IPR016024 -
Viun4g01715 722 SUPERFAMILY ARM repeat 122 286 IPR016024 -
Viun4g01715 722 ProSiteProfiles MI domain profile. 427 548 IPR003891 -
Viun4g01715 722 ProSiteProfiles MI domain profile. 292 413 IPR003891 -
Viun4g01715 722 MobiDBLite consensus disorder prediction 31 67 - -
Viun4g01715 722 SUPERFAMILY ARM repeat 289 409 IPR016024 -
Viun4g01715 722 SMART ma3_7 129 240 IPR003891 -
Viun4g01715 722 SMART ma3_7 596 705 IPR003891 -
Viun4g01715 722 SMART ma3_7 293 404 IPR003891 -
Viun4g01715 722 SMART ma3_7 428 539 IPR003891 -
Viun4g01715 722 Pfam MA3 domain 294 403 IPR003891 -
Viun4g01715 722 Pfam MA3 domain 130 240 IPR003891 -
Viun4g01715 722 Pfam MA3 domain 597 705 IPR003891 -
Viun4g01715 722 Pfam MA3 domain 429 538 IPR003891 -
Viun4g01715 722 ProSiteProfiles MI domain profile. 595 714 IPR003891 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g01715 Viun-Chr4 31167075 31170375 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun4g01715 603 705 Eukaryotic Initiation Factors Gene Family AT5G57870 33.019 9.86e-10 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g01715 - - gmx:102668745 1288.86