LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Viun4g01694	ATGGCGACTCCAAGATTCGGTTATGATGTGTTCCTCAGCTTTAGAGGGGAAGACACGCGATATGGTTTTACTGGCAATCTCTACAAAGCTCTCTGTAACAGAGGAATTCACACTTTCATCGATGATGAGGAGCTTCAGAGCGGGGAGGAAATCACACCAGCACTTCAGAAATCAATTGAAGAATCTAGGATTGCCATAGTTGTGCTCTCTCAAAACTATGCTTCTTCCTCCTTCTGCTTGGATGAACTCGCAACCATCCATTACTGCCACACCCAAGGACAGTTGGTTTTACCGGTCTTCTATAAGGTTCAACCTTCTGATGTCAGACACCAGAAAGGTGGTTATGGAGAAGCATTAACTAAGCATCAGAGAAGGTTCAAAGATAAGGAAAAGTTGCAGAAATGGAAGATGGCTCTGCGTCAAGTAGCTGATTTGTCTGGCTATCATTTCAAAGACGGTGATGGATACGAATACAAGTTTATTGAGAGTGTTGTTGACCGGGTCTGCCACAAGATTAATCCTGCTCGTTTACATGTTGCGGATTACCCTGTTGGACTAGGGCCACAAGTGCTAGAAGTAAGAAAGCTTCTAAACGTTGAATGTGGTGATGGATTCCACATGATAGGGATCCATGGAATGGGTGGCGTAGGAAAAACAACCCTTGCTTTAGCAGTTCATAATTTGATTGCTGACCGTTTTGATGGTTGTTGTTTTCTTCAAAACGTGAGAGAGAAATCAAAAAAGCATGGGCTGGAACACCTCCAAAGCATTCTTCTTTCGAACATACTTGGGGCGAAGGACATCAACTTAACAAGTGAGCATCAAGGAATTTCAATGATACAAAGAAGGAAACCAAAGAAGGTTCTGTTGATTCTTGATGACGTTGATAGGTGTGAGCAGTTACAGGCACTGGTTGGAAGCCCCGATTGGTTTGGTCCCGGCAGCAGGGTCATCATCACAACTCGAGATATACAATTGCTTGCATCTCATCAGGTCAAAAGAACGTATAGTGTCAAGACATTGAACAAAGATGATGCTCTTCAGTTGCTTACATGGAAAGCTTTCAAAACGGAACAGGTTGATCCAAGTTACATGGAGGTGTTGAATGATGTAGTAACTTATGCTTCTGGCCTTCCATTGGCTTTGGAAGTAATTGGTTCCAACCTGTTTGAAAAAAGTGTGGAAGAGTGGAAATCTGCTATCAATCAATATAAAAGAATTCCTAACAATCAAATCCTAGAGATTCTTAAAGTAAGCTTCGATGCTTTGGAGGAAGAAGAGAAGTGTGTTTTTCTTGACATTGCTTGTTGCTTCCAAGGATATGAATTGACAGAGGTTGAGGTTATGCTTCGTGCTCTCTACGATGACTGCATGAAATATCATATTGGGGTGCTGGTTCAAAAATCTCTCATTAAGATTTATTACTCTGGTACAATTGTAATGCATGATTTAATTGGGGACATGGGTAGACAAATTGACCGGAGAGAATCATCGAAAAAGCCAGGAAAGGGCAGGAGATTATGGTTACTTAAAGATATAATTCAAGTTTTAAGGGACAACACAGGAACTAGCGAAACTGAAATCATATGCCTGGATTTGTCTATATCTGAGAAAGAAGAAACGCTAGAATGGAATGCCAACGCCTTCAGAAGGATGAAAAACCTTAAAATACTTATCATTCGAAATGGTAAATTTTGCAAAGGTCCCAATTATTTTCCAGAAAGTTTGAGAATACTGGAATGGCATGGATACCCTTCAAATTGTTTACCATCAAATTTTCATTCCAACAAACTCGTGACATGCAAGTTGCCTAACAGTCCTTTTACGTCATTTGGGTTCCATGGTTCATCAAAGAAGTTCGAGAATTTAACCGAGTTGAATTTTGACAATTGCCAACTTTTAACACGGATGCCTGACCTATCTGATCTCCCAAATCTGGAGAAACTTTCATTTGAACGGTGTGAGAGTTTAATTGCACTTGACGACTCAATTGGTTTTCTGAATAAACTTAAAATATTGAAAGCTCAACGTTGCACAAAACTTCGGAGATTTCCACCTCTCAACTTGCCCTCTCTTGAAGTACTTCATTTTCCATATTGTTACAGTCTTGAGAATTTTCCAGAAATATTAGGAAAGATGGGAAACATAAGAGAACTTTATTTGCTTAACCTCGCCATAAAAGAGTTGCCAGTTTCATTTCAAAATCTTACCGGACTCCATGAGTTATACGCGGCATGTGATTTTCTTCAGTTAAATAGCAGTGCCTTGATGTCTTCGTTGACTACCTTTTACGCTTCTCGATGCAAGGAGTGGAAATGGATAAATTCAAAAGATGGTGAAGAAGTGGGCTCAACGTTATCTTCGAATCTACGTTCGTTTGATTTTGAGCTTTGTGACCTGAATGATGATATTTTTTCAGCAGGTTTTACGCAGTTGACCACAGTTACGTATTTAAACCTATCGTACACTAATATCACATTCCTTCCTGAGTGCATCAAAGAATTTCAGCACCTGGATGATCTTGAGGTGAGTTATTGCAAGTATCTACAGGAAATAAGAGGGCTTCCACCAAACTTGAGAGAGTTCAGGGCGATAGACTGTAGATCATTGACTTCCTCGAGTTCAAGCATGTTGTTAAATCAGCAACTTCACGAGGCTGGAAAGACTAAATTTGTGCTTCCAGGAGGATGTATTCCCGAGTGGTTGGAGAAAGAAAGCAGGGGACCTTCAATTTCTTTCTGGTTTCGTAATCAATTCCCTCCCAAAGTTTTTTGTTTCCTTATTGGATCTGTACGGGATGATACCCACTTTTACTTCATTAGACCCGTGGTGTTAATCAACGGCAAAGTTCAAGAATATAAAGCTGGTTATCATACGGATGTGATAATGCCAGAATTGGATCATATGCAGCTCTTTGATCTACATGTGTTACCGTTCCGTTATAAACTGATGAAAATGGCTTCAGAAAAGGAGTGGAAGCATGTGGAGGTTACATACGAAGGTTTGTTTGATACCTCACTCATCAAAGCAATGGGAATCCATGTATTCAAATCCAAAAGAGGAGGCATGAAGGACATTAGATATGATGATCCTTATACCACCACAAAAGTCTGCCCATGCAACTTCTTTATACCTTTTCTTCCTTTCTTTTTTCGCTTTTTGTTTGCTCTCATTTTATTTATTAGTCTCATGGCCTATCCAACCTAA	3207	0.3998	MATPRFGYDVFLSFRGEDTRYGFTGNLYKALCNRGIHTFIDDEELQSGEEITPALQKSIEESRIAIVVLSQNYASSSFCLDELATIHYCHTQGQLVLPVFYKVQPSDVRHQKGGYGEALTKHQRRFKDKEKLQKWKMALRQVADLSGYHFKDGDGYEYKFIESVVDRVCHKINPARLHVADYPVGLGPQVLEVRKLLNVECGDGFHMIGIHGMGGVGKTTLALAVHNLIADRFDGCCFLQNVREKSKKHGLEHLQSILLSNILGAKDINLTSEHQGISMIQRRKPKKVLLILDDVDRCEQLQALVGSPDWFGPGSRVIITTRDIQLLASHQVKRTYSVKTLNKDDALQLLTWKAFKTEQVDPSYMEVLNDVVTYASGLPLALEVIGSNLFEKSVEEWKSAINQYKRIPNNQILEILKVSFDALEEEEKCVFLDIACCFQGYELTEVEVMLRALYDDCMKYHIGVLVQKSLIKIYYSGTIVMHDLIGDMGRQIDRRESSKKPGKGRRLWLLKDIIQVLRDNTGTSETEIICLDLSISEKEETLEWNANAFRRMKNLKILIIRNGKFCKGPNYFPESLRILEWHGYPSNCLPSNFHSNKLVTCKLPNSPFTSFGFHGSSKKFENLTELNFDNCQLLTRMPDLSDLPNLEKLSFERCESLIALDDSIGFLNKLKILKAQRCTKLRRFPPLNLPSLEVLHFPYCYSLENFPEILGKMGNIRELYLLNLAIKELPVSFQNLTGLHELYAACDFLQLNSSALMSSLTTFYASRCKEWKWINSKDGEEVGSTLSSNLRSFDFELCDLNDDIFSAGFTQLTTVTYLNLSYTNITFLPECIKEFQHLDDLEVSYCKYLQEIRGLPPNLREFRAIDCRSLTSSSSSMLLNQQLHEAGKTKFVLPGGCIPEWLEKESRGPSISFWFRNQFPPKVFCFLIGSVRDDTHFYFIRPVVLINGKVQEYKAGYHTDVIMPELDHMQLFDLHVLPFRYKLMKMASEKEWKHVEVTYEGLFDTSLIKAMGIHVFKSKRGGMKDIRYDDPYTTTKVCPCNFFIPFLPFFFRFLFALILFISLMAYPT	1068

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Viun4g01694	1068	PRINTS	Disease resistance protein signature	282	296	-	-
	Viun4g01694	1068	PRINTS	Disease resistance protein signature	375	389	-	-
	Viun4g01694	1068	PRINTS	Disease resistance protein signature	641	657	-	-
	Viun4g01694	1068	PRINTS	Disease resistance protein signature	207	222	-	-
	Viun4g01694	1068	ProSiteProfiles	TIR domain profile.	6	172	IPR000157	GO:0007165
	Viun4g01694	1068	Gene3D	Ribonuclease Inhibitor	705	887	IPR032675	-
	Viun4g01694	1068	Gene3D	-	3	180	IPR035897	-
	Viun4g01694	1068	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	8	867	IPR044974	GO:0006952
	Viun4g01694	1068	SUPERFAMILY	L domain-like	543	880	-	-
	Viun4g01694	1068	SUPERFAMILY	"Winged helix" DNA-binding domain	411	517	IPR036390	-
	Viun4g01694	1068	Gene3D	-	340	424	IPR042197	-
	Viun4g01694	1068	Pfam	TIR domain	8	173	IPR000157	GO:0007165
	Viun4g01694	1068	Gene3D	Ribonuclease Inhibitor	505	704	IPR032675	-
	Viun4g01694	1068	SUPERFAMILY	Toll/Interleukin receptor TIR domain	4	148	IPR035897	-
	Viun4g01694	1068	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	173	434	IPR027417	-
	Viun4g01694	1068	SMART	till_3	7	145	IPR000157	GO:0007165
	Viun4g01694	1068	FunFam	Disease resistance protein (TIR-NBS-LRR class)	5	174	-	-
	Viun4g01694	1068	Pfam	NB-ARC domain	193	406	IPR002182	GO:0043531
	Viun4g01694	1068	Gene3D	-	182	336	IPR027417	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Viun4g01694	Viun-Chr4	30650630	30654691	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Viun4g01694	4	841	WRKY Transcription Factor Family	AT4G12020	29.215	2.14e-79	283

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Viun4g01694	-		-	var:108344036	1338.17