Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g01646 ATGGAAGATTCAGAGGAAGAAGAGCTTCTAAATCTCACTCTTTCGGTTGCTGCAGGTGGAGAGAGGAAAAAGAAAGGAAGGACAAAAGATGATACAAATTCTCTTGTTATTCCTATGAAGTCCAGTGAAGGGTATGAAGGGAAGATCTTTAGGCTGCTACAGATGAGGGAGCTGATGCTAAGAGAAGATCACAGAAGAAAAGGAGTGGTTGAAGATGGGAATAATAATGGTCTTCCTTTGATTCATTTGCTTCTTTCAACTGCCACTTCTATTGATGAGAGAAACTACTGTGCAACTCTAGAGAATCTGATTGAGTTATATCAAACAGTTTCCCTAATAGGTGATTCAGTTCAACGTGTGGTGGCCTATTTTGCTGATGGTTTGGCTGCAAGGCTTCTCACAAGAAAATCCCCTTTCTATGACATGGTCATGGAGGAACCAACAAGTGAGGAAGAGTTTCTTGCATTCACAGATCTCTATAGAGTCTCACCCTATTACCAATTTGCTCACTTCACAGCAAACCAGGCTATTTTGGAGGCCTATGAGGAGGAAGAAGAGAGGAACAACAAAGCACTTCATGTCATTGACTTTGATGTCTCCTATGGCTTCCAATGGCCTTCTCTCATTCAATCACTTTCTGAAAAAGCAACCAGTGGCAACAGAATATCTCTCAGGATAACAGGTTTCGGGAACAACCTTAAAGAACTGCAAGAAACTGAGGCCAGATTAGTTAGCTTCTCAAAGGGTTTCAGTAACCACCTAGTGTTTGAGTTCCAAGGGCTTCTAAGAGGCTCATCAAGGCTCATCAATCTGAGGAGGAAGAAAAATGAAACTTTGGCAGTGAACCTTGTTTCTTACTTGAACACTTTGAGTAGTTTCATGAAGGTGTCGGACACATTAGGACTTGTTCATTCTCTTAGCCCCTCCATTGTGGTGTTGGTGAAACAAGAAGGTAGCAGGAGTCTGAAGACCTTCTTGTCAAGGTTCACTGAGTCTTTGCACTATTTTGCTGCCATGTTTGATTCACTAGATGATTGCTTGCCACTTGAGAGCGCTGAGAGGTTGAGGATTGAGAAGAAGCTTTTGGGGAAAGAGATCAAAAGCATGCTGAACTATGACATGGATGGTGTGGATTGCCCAAAGTATGAGAGGATGGAAACATGGAAAACAAGAATGGAGCATCATGGTTTTGTGGGAAGAAAAATTAGCTCAAAGTGTGTGATCCAAGCGAAGCTGCTTCTGAAGATGAGAACCCATTATTATCCTCTACAGTTTGAGGAAGAGGGTGGAAGTGGGGGTTTCAGAGTTTCTGAAAGGGATGAAGGAAGAGTTATCTCTTTGGGATGGCAAAATAGGTTTCTTCTCACAGTCTCAGCATGGCAACCAATTTGA 1392 0.4231 MEDSEEEELLNLTLSVAAGGERKKKGRTKDDTNSLVIPMKSSEGYEGKIFRLLQMRELMLREDHRRKGVVEDGNNNGLPLIHLLLSTATSIDERNYCATLENLIELYQTVSLIGDSVQRVVAYFADGLAARLLTRKSPFYDMVMEEPTSEEEFLAFTDLYRVSPYYQFAHFTANQAILEAYEEEEERNNKALHVIDFDVSYGFQWPSLIQSLSEKATSGNRISLRITGFGNNLKELQETEARLVSFSKGFSNHLVFEFQGLLRGSSRLINLRRKKNETLAVNLVSYLNTLSSFMKVSDTLGLVHSLSPSIVVLVKQEGSRSLKTFLSRFTESLHYFAAMFDSLDDCLPLESAERLRIEKKLLGKEIKSMLNYDMDGVDCPKYERMETWKTRMEHHGFVGRKISSKCVIQAKLLLKMRTHYYPLQFEEEGGSGGFRVSERDEGRVISLGWQNRFLLTVSAWQPI 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g01646 463 ProSiteProfiles GRAS family profile. 71 461 IPR005202 -
Viun4g01646 463 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 77 456 IPR005202 -
Viun4g01646 463 Pfam GRAS domain family 80 461 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g01646 Viun-Chr4 29839007 29840912 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun4g01646 66 461 GRAS Transcription Factor Family AT1G14920 33.496 2.35e-55 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Viun4g01646 GRAS 9.5e-88 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g01646 - - gmx:100798251 782.711
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun4g01646 4 29839007 29840912 Viun4g01646 4 29839007 29840912 ECH
Viun4g01646 4 29839007 29840912 Viun7g02976 7 32782112 32783628 PCT