Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g01613 ATGGGCAGGTATGACCACCCTTCCACATATTTGCTTATTGTTGTTTTCTTCCTCTTTTGTTTCTCTCCCATGGTGTTCTCCCTGCTATCACAAACCCAAAACGAAGCCATGAACAATCTCTCAAACAATCTTCCTGCTAGGCTTCCATGGACGGGCTCAGACCCATGTGCATGGAAGGGAGTGAGTTGTGGCCCTGCTAACTCCTCTGTAGTAGGGATTTCTTTATCTGCTTTTTCACTCAATTCTTCTGACTTTCTGCCCCTTGTTTGCAAAATTGAAACTTTGGAGTATCTTGATGTCTCCCAAAACCGTCTCAGCTCAATCCCTGATGGTTTCATCACTGAGTGTGGAAAGATAAAGGGTTTGAAGCGGTTGAATTTCAGTGATAATTTGTTAGAAGGTGTTTTACCTACTTTTCTTGGCTTTGATGCATTGGAATCCCTGGACATGTCTTTCAATGCAATGAGGGGGACTATTGGTTTACAGATAGATGGGTTGGTTAGCCTCAAAATTTTGAATCTTACTTTCAATGAATTCACTGGGTCTCTTCCTACCAAATTGGGAAAGTCCATGGTTTTGGAGCACCTTTTGCTTTCTAACAATAGCTTTGATGGCAAAATCCCTGATGAATTATTGAGTTATGAAAACTTGACTTGGATTGATCTTAAGAACAATAGACTCTCACAGTCTATTCCTACCAATATTGGGAAGCTTTCTAAATTGGAAACTTTGATCCTTTCCACTAATAACCTCAATGGTGAAATTCCAATTTCACTGGTGAACGCCACCAAACTTTCAAGATTTGCAGCAAATCAGAACAAGTTCACAGGTTCTATACCTTCTGGGATTACAAAATATCTCACGAGTTTGGATCTTAGTTATAATACTCTGTCTGGACCCATTCCCGAAGACTTTTTATCTCCACCACAGTTGCAGGTTGTAGATTTGACCAATAATACGTTAAATGGGTCTTTACCTACGAAAGTTTCTCCAAATTTGTTCAGGTTGAGGTTTGGGAGCAATCAGCTGAGTGGAAACATTCCTTCAAAGGCTTTTGAAGAAGTTCATAATTTGACATACTTGGAGCTGGATAACAATATCTTGATGGGATCGATACCAGCTGAATTGAGTTTTTGCAAGAGTTTGACATTGTTGAATTTAGCTCAGAATTGGTTGAGTGGTGAATTGCCACAAGAGCTTGGCAATCTTACCAATCTCCATGTCTTGCAGCTCCAATTGAACAATTTTAGTGGTGCCATCCCAACTCAAATTGGCCAACTTCGTAAGTTGTTAACCCTGAATTTGAGCCGGAATTCTCTGAGTGGACCAATTCCATCCGAGATTAAAAATTTAAGTTTGCTTAATTTCCTGTACTTGCAAGGCAACTATCTTAGTGGTTCCATACCAACATCCATTCGCATGTTGGATCATCTTTTAGCACTCGAACTTGGGGAAAACCACTTAACAGGTGAGATTCCAAGCATGCCATACAGTCTGCAGGTTACATTGAATCTTAGTAGCAACCTCTTTAGTGGTCCTATTCCTAACAGTTTTGGTAGTTTGAGTAGCCTAGAAATCTTGGATCTCTCCAATAACGGCTTTTCTGGTCGAATTCCTGATGATCTTACTTACATGCCGGCTTTGACACGGTTGATACTTTCTAACAATCCTCTGTCTGGTGAAATCCCGAAATTCAATCACCATGTTAATGTTGAATATTCTGGAACTAATCTAAAAAACAATACTCCACAGGAGAACCCTATTGCCAACAGAGGGTCCAAGAATGGAATATCCGTTGCAGTAGCCATTCTCATTGCAATTGTAGCAGCTATTTTTCTTGTGGGCTTTGTCACTCTGTTGGTTTTGTCATTGTCACGCCACTATTACAGGGTTAATGACGAGCATTCACAGCCAACAGAAGTTCGTCAGCATCCTCAGGTCATGCAAAGTAATCTGTTAACTCTTAATGGAATACATAGATCAAACATTGACTTCTCCAAAGCCATGGAAGCTGTTGCTGAAACATCAAATGTTACTCTTAAAACAAGGTTTTCAACTTATTATAAGGCTGTCATGCCGTCTGGTTCAATCTATTATGTCAAGAAACTGAACTGGTTTGACAAGATATTCCAAGTGGGAAGTCATGATAAGTTTGTTAAAGAGCTAGAGGTATTGGCCAAATTGAACAATTCAAATGTCATGACTCCTTTGGCCTATGTTCTGTCCACTGACACTGCTTATATACTATACGACTTTATCTCAAATGGCTCCCTTTTTGATGTTCTTCATGGAAGCATGGATTTGACTTTAGATTGGGCTAGCAGATACAGTATAGCTGTTGGAGTGGCTCAAGGACTTTCTTTTCTTCACGGATTCGCCTCTAGTCCAATACTACTCCTTGACCTGTCAAGTAAAAGTATTATGCTGAAGTCCCTCAAGGAGCCTCTAGTTGGGGATATTGAACACTACAAGGTGATTGATCCCTCAAAGAGTACGGGGAACTTTTCTGCAGTTGCTGGTTCAGTTGGTTATATTCCTCCAGAGTATGCATACACAATGACAGTAACAATGGCTGGGAATGTCTACAGCTTTGGTGTGATTCTGCTTGAACTGCTAACAGGAAAACCTGCAGTGACTGAGGGAACGGAATTGGTGAAGTGGGTTTTGCGTAACTCCACAAACCAAGATTACATTCTTGACTTTAATGTCAGTAGAACATCACAAGCAGTCAGAAACCAGATGCTTGCAATTCTTGAGATTGCTCGTGTTTGTGTTGGTACATCCCCAGAATCAAGACCAAAGATGAAGAGTGTGCTAAGAATGCTCTTAAATGCTAGATGA 2841 0.4044 MGRYDHPSTYLLIVVFFLFCFSPMVFSLLSQTQNEAMNNLSNNLPARLPWTGSDPCAWKGVSCGPANSSVVGISLSAFSLNSSDFLPLVCKIETLEYLDVSQNRLSSIPDGFITECGKIKGLKRLNFSDNLLEGVLPTFLGFDALESLDMSFNAMRGTIGLQIDGLVSLKILNLTFNEFTGSLPTKLGKSMVLEHLLLSNNSFDGKIPDELLSYENLTWIDLKNNRLSQSIPTNIGKLSKLETLILSTNNLNGEIPISLVNATKLSRFAANQNKFTGSIPSGITKYLTSLDLSYNTLSGPIPEDFLSPPQLQVVDLTNNTLNGSLPTKVSPNLFRLRFGSNQLSGNIPSKAFEEVHNLTYLELDNNILMGSIPAELSFCKSLTLLNLAQNWLSGELPQELGNLTNLHVLQLQLNNFSGAIPTQIGQLRKLLTLNLSRNSLSGPIPSEIKNLSLLNFLYLQGNYLSGSIPTSIRMLDHLLALELGENHLTGEIPSMPYSLQVTLNLSSNLFSGPIPNSFGSLSSLEILDLSNNGFSGRIPDDLTYMPALTRLILSNNPLSGEIPKFNHHVNVEYSGTNLKNNTPQENPIANRGSKNGISVAVAILIAIVAAIFLVGFVTLLVLSLSRHYYRVNDEHSQPTEVRQHPQVMQSNLLTLNGIHRSNIDFSKAMEAVAETSNVTLKTRFSTYYKAVMPSGSIYYVKKLNWFDKIFQVGSHDKFVKELEVLAKLNNSNVMTPLAYVLSTDTAYILYDFISNGSLFDVLHGSMDLTLDWASRYSIAVGVAQGLSFLHGFASSPILLLDLSSKSIMLKSLKEPLVGDIEHYKVIDPSKSTGNFSAVAGSVGYIPPEYAYTMTVTMAGNVYSFGVILLELLTGKPAVTEGTELVKWVLRNSTNQDYILDFNVSRTSQAVRNQMLAILEIARVCVGTSPESRPKMKSVLRMLLNAR 946
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g01613 946 SUPERFAMILY Protein kinase-like (PK-like) 684 942 IPR011009 -
Viun4g01613 946 PRINTS Leucine-rich repeat signature 287 300 - -
Viun4g01613 946 PRINTS Leucine-rich repeat signature 521 534 - -
Viun4g01613 946 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 310 585 - -
Viun4g01613 946 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 31 185 - -
Viun4g01613 946 SUPERFAMILY L domain-like 40 326 - -
Viun4g01613 946 Gene3D Phosphorylase Kinase; domain 1 634 752 - -
Viun4g01613 946 SMART LRR_typ_2 166 190 IPR003591 -
Viun4g01613 946 SMART LRR_typ_2 238 262 IPR003591 -
Viun4g01613 946 SMART LRR_typ_2 92 115 IPR003591 -
Viun4g01613 946 SMART LRR_typ_2 521 545 IPR003591 -
Viun4g01613 946 SMART LRR_typ_2 403 427 IPR003591 -
Viun4g01613 946 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 186 279 - -
Viun4g01613 946 Gene3D Transferase(Phosphotransferase) domain 1 753 946 - -
Viun4g01613 946 FunFam Leucine-rich repeat receptor-like tyrosine-protein kinase PXC3 641 752 - -
Viun4g01613 946 ProSiteProfiles Leucine-rich repeat profile. 94 115 IPR001611 GO:0005515
Viun4g01613 946 Gene3D Ribonuclease Inhibitor 286 587 IPR032675 -
Viun4g01613 946 ProSiteProfiles Protein kinase domain profile. 673 946 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun4g01613 946 Gene3D Ribonuclease Inhibitor 143 214 IPR032675 -
Viun4g01613 946 Gene3D Ribonuclease Inhibitor 28 142 IPR032675 -
Viun4g01613 946 Gene3D Ribonuclease Inhibitor 215 285 IPR032675 -
Viun4g01613 946 Pfam Protein kinase domain 684 940 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun4g01613 946 FunFam leucine-rich repeat receptor-like tyrosine-protein kinase PXC3 753 946 - -
Viun4g01613 946 Pfam Leucine rich repeat 94 154 IPR001611 GO:0005515
Viun4g01613 946 Pfam Leucine rich repeat 404 464 IPR001611 GO:0005515
Viun4g01613 946 Pfam Leucine rich repeat 502 558 IPR001611 GO:0005515
Viun4g01613 946 SUPERFAMILY RNI-like 257 571 - -
Viun4g01613 946 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 287 943 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g01613 Viun-Chr4 29009136 29013417 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun4g01613 145 946 Receptor kinase-like Gene Family AT2G41820 37.906 1.66e-147 458
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Viun4g01613 Pkinase 1.8e-21 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g01613 - - gmx:100796647 1368.21