Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g01597 ATGATCGGAAACTTCATTGACGACATTGATTGCGGCAGCTTCTTCGACCACATAGACGACCTCCTCGAATTCCCCGAGGAAGAAACAGCCGTCACAGACACTACTGTTGTTACACCGGTTGCTCCTCCGACAACCTTCTGGCCGGCAGAGTCTGACTCGCTTCATGCCACCAATACGGTGTTTTCCGGCAACACTGTGCCAGACCTCTCGACAGAGCTCTCTGTTCCGTTTGAAGACATTGTACAATTGGAATGGCTGTCAAATTTTGTCGAGGACTCTTTCTCCGGAGGGAGTCTCACCATGCAGCAAGAGCAGCCACAATGCACCAACAAGGAGGACACAACTCATGCTCAATTCCAGACAGCAAGTCCAGTCTCAGTCCTTGAAAGCAGCACGTTCTCTTCCCGGGAGAAGGCTGCATCTCGTGGCGCGGAGATTTACATCCCCGTGCCATGTGGACGTGCACGAAGTAAACGTGCACGTCCTGTAGTCTTCAATCCTCATCCAGTGATGCAGCTGATCTCGTCGGCGTCTTCCACCGGCGAGAACACACATCACAACACCACCGCCACCTCCAAGACGTCCTCAGACTCTGAGAATTTTGCCGAGTCTACCATCAAGACACCAAAACAGGTATCTGGTGACCACAAGAAGAAAAAGAAGATCAAAGTGACTTTCTCAGGTGGTGAAGACCACAATGCTGCACCATCACAAACAGTGAGAAAATGTGTTCACTGTGAGATAACCAAGACACCACAGTGGAGGGCAGGGCCAATGGGGCCAAAAACACTCTGCAATGCTTGTGGCGTGCGCTACAAGTCAGGGCGGCTCTTCCCCGAATACCGGCCGGCCGCCAGTCCGACGTTCTGTGCAGCTGTGCACTCCAACTCCCACAAGAAGGTCCTTGAAATGAGAAACAAAACAGTCTCCAAATCTGGTTTTGCAGCAGATTCAGAGTCCTCACCAGAACTTATTCCAAACACTAACACCAGCCTTTCACTGGAATACATGTGA 1014 0.5128 MIGNFIDDIDCGSFFDHIDDLLEFPEEETAVTDTTVVTPVAPPTTFWPAESDSLHATNTVFSGNTVPDLSTELSVPFEDIVQLEWLSNFVEDSFSGGSLTMQQEQPQCTNKEDTTHAQFQTASPVSVLESSTFSSREKAASRGAEIYIPVPCGRARSKRARPVVFNPHPVMQLISSASSTGENTHHNTTATSKTSSDSENFAESTIKTPKQVSGDHKKKKKIKVTFSGGEDHNAAPSQTVRKCVHCEITKTPQWRAGPMGPKTLCNACGVRYKSGRLFPEYRPAASPTFCAAVHSNSHKKVLEMRNKTVSKSGFAADSESSPELIPNTNTSLSLEYM 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g01597 337 PANTHER GATA TRANSCRIPTION FACTOR 17 320 - -
Viun4g01597 337 SMART GATA_3 237 287 IPR000679 GO:0006355|GO:0043565
Viun4g01597 337 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 241 300 - -
Viun4g01597 337 MobiDBLite consensus disorder prediction 113 132 - -
Viun4g01597 337 MobiDBLite consensus disorder prediction 176 209 - -
Viun4g01597 337 MobiDBLite consensus disorder prediction 176 219 - -
Viun4g01597 337 PIRSF Txn_fac_GATA_plant 2 331 IPR016679 GO:0003677|GO:0005634|GO:0045893
Viun4g01597 337 MobiDBLite consensus disorder prediction 313 337 - -
Viun4g01597 337 Pfam GATA zinc finger 243 276 IPR000679 GO:0006355|GO:0043565
Viun4g01597 337 ProSitePatterns GATA-type zinc finger domain. 243 268 IPR000679 GO:0006355|GO:0043565
Viun4g01597 337 CDD ZnF_GATA 242 289 IPR000679 GO:0006355|GO:0043565
Viun4g01597 337 Gene3D - 237 287 IPR013088 GO:0006355|GO:0008270
Viun4g01597 337 ProSiteProfiles GATA-type zinc finger domain profile. 237 273 IPR000679 GO:0006355|GO:0043565
Viun4g01597 337 FunFam GATA transcription factor 233 318 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g01597 Viun-Chr4 28759544 28763419 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun4g01597 18 307 C2C2-Gata Transcription Factor Family AT4G32890 36.610 1.45e-48 163
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Viun4g01597 GATA 1.1e-15 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g01597 - - gmx:100792644 533.102