Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g01575 ATGGAAATTCAGTTCCAACATCCAAAGCATCAACACTTGAGACCAAAAGGGGTGAAACTCAAAGGCAGAAACAACAAAAGCAAGAACAAGTACGTTGGAGTGAGGCAAAGAGCATCAGGAAAATGGGTTGCAGAGATCAAAGAAACAACACAGAAGATAAGAATGTGGCTTGGCACGTACGACACTGCAGAAGAAGCAGCTAGGGCTTACGATGAAGCTGCATGTCTCCTTCGTGGATCCAACACTCGCACCAACTTCATCACACGTGTGTCCTCTGATTCCCCTCTTGCTTCACGGATTCAGAACCTTCTCAACAACAGAAAAGGAATCAAAGAACAAGAACAGCATGGAACAAGGGTCAACACCGACCAACAACATGAGTTGAGTCTATCAGAAGAAGGGGTTTCTACCCTACAAGATGAGGAACCAAAGTTCCAATCTTTGCTGGAACAAGTGTCTATATTCAGTGTTCTCCAACAAGATTGTTTTGTAAAGAAGACATGTGTGAGAGATCAGGAGAAAAAAAGGGTTAGCAGCACAACAAGTAGTGGTAGTAGTACTAACATAAGCAATAGTGAGACAAGTGAGAACTCACTTTCTACAACAACCCAGAACACACAAGTGTTTGATGATGATTATAGACCTGATTTGAGCAATTTCATGGGGTCTGAGTCAGATTCTCAGGAAAATCCTTCATGGGGTTGTGAACTTTTTTGTGATCATTTTCCCTTTGGCCAAGTAAACCTGCCTGATATAGGTGGCTTGGAGCTTCCAGAGTTTGAAAGGATGAAGGTTGAAAGGCAAATTTCAGCTTCACTTTATGCAATGAATGGTGTGCAAGAGTACATGAACACAGTTCAGGACTCTAATAGCTGTGAAGCTATCTGGAATCTTCCTCCCTTGTGCTCGTTTTTATGTTAA 921 0.4224 MEIQFQHPKHQHLRPKGVKLKGRNNKSKNKYVGVRQRASGKWVAEIKETTQKIRMWLGTYDTAEEAARAYDEAACLLRGSNTRTNFITRVSSDSPLASRIQNLLNNRKGIKEQEQHGTRVNTDQQHELSLSEEGVSTLQDEEPKFQSLLEQVSIFSVLQQDCFVKKTCVRDQEKKRVSSTTSSGSSTNISNSETSENSLSTTTQNTQVFDDDYRPDLSNFMGSESDSQENPSWGCELFCDHFPFGQVNLPDIGGLELPEFERMKVERQISASLYAMNGVQEYMNTVQDSNSCEAIWNLPPLCSFLC 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g01575 306 Gene3D AP2/ERF domain 29 89 IPR036955 GO:0003700|GO:0006355
Viun4g01575 306 Pfam AP2 domain 30 79 IPR001471 GO:0003700|GO:0006355
Viun4g01575 306 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 26 269 - -
Viun4g01575 306 PRINTS Ethylene responsive element binding protein signature 53 69 IPR001471 GO:0003700|GO:0006355
Viun4g01575 306 PRINTS Ethylene responsive element binding protein signature 31 42 IPR001471 GO:0003700|GO:0006355
Viun4g01575 306 SUPERFAMILY DNA-binding domain 30 87 IPR016177 GO:0003677
Viun4g01575 306 SMART rav1_2 30 93 IPR001471 GO:0003700|GO:0006355
Viun4g01575 306 ProSiteProfiles AP2/ERF domain profile. 30 87 IPR001471 GO:0003700|GO:0006355
Viun4g01575 306 MobiDBLite consensus disorder prediction 174 214 - -
Viun4g01575 306 CDD AP2 30 86 IPR001471 GO:0003700|GO:0006355
Viun4g01575 306 FunFam ethylene-responsive transcription factor RAP2-11 29 88 - -
Viun4g01575 306 MobiDBLite consensus disorder prediction 178 212 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g01575 Viun-Chr4 28399664 28400944 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun4g01575 209 306 AP2-EREBP Transcription Factor Family AT5G19790 31.193 4.09e-06 45.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Viun4g01575 AP2 3.5e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g01575 K09286 - gmx:100792432 358.607