Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g01556 ATGGACATGGATGTTTGCAGAAATGTATCAGTTTCTGGTGAGTGTCAGCAAGAGCTTCCCACCCTTGATGACCTTTTCTCACATCAGAACATGGAAGAGGATTTTGGCATGGAATGGTTGTCTGTGTTTGTGGAAGACTGTTTTTCCAGTAAGCCAAGTTGCCTCTTGGCACCCCCTGGTGTTGAAAGCAGAAGCACAAGCAGTAGCAGCAAGCCTTCAAGCACAATGCAAAGACCCCAACAAAGTTACTGTCCTCTGCAGAATTTTTCTGTGCCAGGGAAAGCCAGGAGCAAGAGGAAGAGGCTATCAGCACCAAGGACAAAACACACTCTAAGCACTTGGTCTCATAATTTCAGCACTCAAGTGTTGAGTTCTGACCCTCCTCTGTTGAAACAAGCCTATTGGTTGGCTGATAGTGAACTCATTGTCCCAAAGAAGAAGGATGAGGAAGAAGTGAAAGTAGAGATTGTGGTGAGGAAGGAGAAACTGGGGGAGTGTTGTGATGAAGATGAGGGTGAAGTGAACAATAGTAGTAATAATAATAATGGGCAGCACCCAATTCCAAGAAGGTGCACACATTGTCTGGCTCAGAGGACCCCACAGTGGAGGGCAGGACCATTGGGTCCAAAGACACTATGCAATGCATGTGGTGTGAGGTACAAGTCTGGAAGGTTGTTGCCAGAGTATAGGCCAGCCAAGAGCCCTACTTTTGTTAGCTATTTGCATTCAAATTCACACAAGAGAGTCATGGAGATGAGAATGAGTGTTCCATCTACTCAGAAGTGA 786 0.4593 MDMDVCRNVSVSGECQQELPTLDDLFSHQNMEEDFGMEWLSVFVEDCFSSKPSCLLAPPGVESRSTSSSSKPSSTMQRPQQSYCPLQNFSVPGKARSKRKRLSAPRTKHTLSTWSHNFSTQVLSSDPPLLKQAYWLADSELIVPKKKDEEEVKVEIVVRKEKLGECCDEDEGEVNNSSNNNNGQHPIPRRCTHCLAQRTPQWRAGPLGPKTLCNACGVRYKSGRLLPEYRPAKSPTFVSYLHSNSHKRVMEMRMSVPSTQK 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g01556 261 CDD ZnF_GATA 190 237 IPR000679 GO:0006355|GO:0043565
Viun4g01556 261 MobiDBLite consensus disorder prediction 60 88 - -
Viun4g01556 261 MobiDBLite consensus disorder prediction 58 107 - -
Viun4g01556 261 MobiDBLite consensus disorder prediction 169 188 - -
Viun4g01556 261 MobiDBLite consensus disorder prediction 173 187 - -
Viun4g01556 261 SMART GATA_3 185 239 IPR000679 GO:0006355|GO:0043565
Viun4g01556 261 ProSiteProfiles GATA-type zinc finger domain profile. 189 221 IPR000679 GO:0006355|GO:0043565
Viun4g01556 261 PANTHER GATA TRANSCRIPTION FACTOR 21 257 - -
Viun4g01556 261 ProSitePatterns GATA-type zinc finger domain. 191 216 IPR000679 GO:0006355|GO:0043565
Viun4g01556 261 Gene3D - 181 260 IPR013088 GO:0006355|GO:0008270
Viun4g01556 261 FunFam GATA transcription factor 179 261 - -
Viun4g01556 261 Pfam GATA zinc finger 191 225 IPR000679 GO:0006355|GO:0043565
Viun4g01556 261 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 187 249 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g01556 Viun-Chr4 27916619 27918421 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun4g01556 37 253 C2C2-Gata Transcription Factor Family AT4G32890 41.441 1.07e-42 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Viun4g01556 GATA 1.1e-14 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g01556 - - pvu:PHAVU_004G079200g 446.047