Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g01548 ATGGAAAATGAGCTTGTGCTTGGAAGAAGAAGAAGAACTTCATCCTACATGATGCATCTTTTCAGAGGACTTCATGTGAGGATGGTGTCTGAGTTTGAAAACCTTGAAGACAATAGGAACATGGATGGTAGCAGCATTCTTGTGATTGATCCATTCAATGAAGGTGCACTGATTGTGAGAGGCCCTAACATGAACCACACAAGTGGTCCAAATGAGAACAATGCTGTTGGGAGCTCCCTGAATGACCTTGTGGTAGGTTCTGGCTTTGATTTGTTGCTGCAACACTTGGCACAGATTGGTCCTGGTGGGTATGCTAGTGTGAACCCTCCAGCACAGAAGGCAGCAATTGAAGCATTGCCTAGTGTGACTAGTGAGGAGAAGTTGCAGTGCACAGTGTGCTTGGAGGATGTTGAGGCTGGGACTGAAGCAAAGGAGATGCCATGCAAGCATATGTTCCATGATGATTGCATTGTCTCATGGCTCAAACTTCATGGTTCTTGTCCTGTTTGCAGGTTTCAGATGCCATATGAGGATTCAAATGTTGAAGCCAATGTGGGAAATGGAACTGATAATCAGAACAGTGAGCTAGTCAGAGCTGGAGAAGAGAGACCAAGAAATGGAAGGAGGAACTGGTTTCCTGTGCTGCAATCATTCAGCAATTTTCTTCCTTCTCCCTGA 678 0.4528 MENELVLGRRRRTSSYMMHLFRGLHVRMVSEFENLEDNRNMDGSSILVIDPFNEGALIVRGPNMNHTSGPNENNAVGSSLNDLVVGSGFDLLLQHLAQIGPGGYASVNPPAQKAAIEALPSVTSEEKLQCTVCLEDVEAGTEAKEMPCKHMFHDDCIVSWLKLHGSCPVCRFQMPYEDSNVEANVGNGTDNQNSELVRAGEERPRNGRRNWFPVLQSFSNFLPSP 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g01548 225 ProSiteProfiles Zinc finger RING-type profile. 130 171 IPR001841 -
Viun4g01548 225 SUPERFAMILY RING/U-box 120 177 - -
Viun4g01548 225 Pfam Ring finger domain 129 171 IPR001841 -
Viun4g01548 225 SMART ring_2 130 170 IPR001841 -
Viun4g01548 225 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 104 177 IPR013083 -
Viun4g01548 225 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 68 175 - -
Viun4g01548 225 FunFam E3 ubiquitin-protein ligase RNF181 102 177 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g01548 Viun-Chr4 27794320 27796003 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun4g01548 46 190 C3H Transcription Factor Family AT1G26800 32.877 4.65e-23 90.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g01548 - K11982 vun:114182622 465.692