Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g01544 ATGTACTATCAGCAGCAGCAGCAGCAGCAACAAGCAAGAAACATGCATGCTTTAAGGATGCACAGCCCCACTGAGAGGCATATGATGATGCAAGGAGGCAATGGTGCTGGTGATTCAGGACTTGTTCTTTCAACTGATGCTAAGCCTAGACTAAAATGGACACCAGATCTTCATGAACGGTTCATAGAAGCAGTTAATCAACTTGGAGGAGCAGACAAAGCCACACCCAAAACAGTTTTGAAACTGATGGGGATTCCTGGGCTTACTCTCTACCACTTAAAGAGTCATCTACAGAAGTACAGAATCAGTAAAAATATGCATGGACAAACCAATACTGGCAACAATAAAATTGAAGCAACAGGCAGAATCTCAGAAGCAAGTGGAATTCAAATGAAACATTTAAGCATAGGCCTACAGACAAACAAAAATTCAGAAATAAATGATGCGTTACAGATGCAAATCGAAGTACAAAGAAGACTGCATGAACAGCTTGAGGTACAGCGACACTTGCAGCTAAGGATAGAGGCACAAGGGAAGTACCTTCAGGCAGTGTTGGAAAAGGCACAAGAAACACTAGGAAGACAAAATATAGGTGCAGAGGGTGTTGAAGCTGCCAAAGTTCAATTATCAGAACTGGCATCAAGAGTATCCTCTCAGAGTCTTGACACAAAATTTTCAGAACTGAAAGAACTTCAGGTCCTGTGGCCTCAGCAAACACAAGAGTGTTCAATGGGGAGTTTCTTGACCTATAGTGAGGAATCACAAAGAGACAGAGAAACACATAACATGAGCCTGAATCTGATAGCCTACAATGGCCCTCCATTTTCAGTTTCAAAAGATTGTGTGGAAGAGTCAATGCAGTTAAAGCCTGATCTCACATTGAGTGAAGATATGAAGCAGAATATGATGTTTGTTTCCTCATCAAGTGATGGTAAAGTAGTGAAGGGAGATTTTTTACAAGAAAGGCCTTCAAGCCTCTTATCCATGAATGTTGGAGTTGTAGAAGAGGAAAAATTTGGGAGAACAACTCTTTCAGAAACTGGGAGAATGGCAATTAAATTGAACAACCATGAGAAGATTTCTTCAGATTATAGACTTCCAAACTTTGAAGTGAAACTGGACCTGAATTCCCATGATGATAATGATGCTTCTTCTCACTGCCAACAATTTGATTTGAATGGTTTCAGCTGGAATTGCTAG 1200 0.4067 MYYQQQQQQQQARNMHALRMHSPTERHMMMQGGNGAGDSGLVLSTDAKPRLKWTPDLHERFIEAVNQLGGADKATPKTVLKLMGIPGLTLYHLKSHLQKYRISKNMHGQTNTGNNKIEATGRISEASGIQMKHLSIGLQTNKNSEINDALQMQIEVQRRLHEQLEVQRHLQLRIEAQGKYLQAVLEKAQETLGRQNIGAEGVEAAKVQLSELASRVSSQSLDTKFSELKELQVLWPQQTQECSMGSFLTYSEESQRDRETHNMSLNLIAYNGPPFSVSKDCVEESMQLKPDLTLSEDMKQNMMFVSSSSDGKVVKGDFLQERPSSLLSMNVGVVEEEKFGRTTLSETGRMAIKLNNHEKISSDYRLPNFEVKLDLNSHDDNDASSHCQQFDLNGFSWNC 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g01544 399 Coils Coil 147 167 - -
Viun4g01544 399 Gene3D - 47 105 - -
Viun4g01544 399 Pfam MYB-CC type transfactor, LHEQLE motif 145 191 IPR025756 -
Viun4g01544 399 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 21 268 IPR044848 GO:0003700
Viun4g01544 399 FunFam Myb family transcription factor 47 105 - -
Viun4g01544 399 SUPERFAMILY Homeodomain-like 47 103 IPR009057 -
Viun4g01544 399 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 45 105 IPR017930 -
Viun4g01544 399 Pfam Myb-like DNA-binding domain 50 101 IPR001005 -
Viun4g01544 399 NCBIfam myb-like DNA-binding domain, SHAQKYF class 48 103 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g01544 Viun-Chr4 27776994 27780441 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun4g01544 80 398 G2-like Transcription Factor Family AT3G04030 49.544 3.12e-87 265
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Viun4g01544 Myb_DNA-binding 4.6e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g01544 - - gmx:100786282 680.633