Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g01543 ATGTACTATCAGCAGCAGCAGCAGCAGCAACAAGCAAGAAACATGCATGCTTTAAGGATGCACAGCCCCACTGAGAGGCATATGATGATGCAAGGAGGCAATGGTGCTGGTGATTCAGGACTTGTTCTTTCAACTGATGCTAAGCCTAGACTAAAATGGACACCAGATCTTCATGAACGGTTCATAGAAGCAGTTAATCAACTTGGAGGAGCAGACAAAGCCACACCCAAAACAGTTTTGAAACTGATGGGGATTCCTGGGCTTACTCTCTACCACTTAAAGAGTCATCTACAGAAGTACAGAATCAGTAAAAATATGCATGGACAAACCAATACTGGCAACAATAAAATTGAAGCAACAGGCAGAATCTCAGAAGCAAGTGGAATTCAAATGAAACATTTAAGCATAGGCCTACAGACAAACAAAAATTCAGAAATAAATGATGCGTTACAGATGCAAATCGAAGTACAAAGAAGACTGCATGAACAGCTTGAGCAGGTACAGCGACACTTGCAGCTAAGGATAGAGGCACAAGGGAAGTACCTTCAGGCAGTGTTGGAAAAGGCACAAGAAACACTAGGAAGACAAAATATAGGTGCAGAGGGTGTTGAAGCTGCCAAAGTTCAATTATCAGAACTGGCATCAAGAGTATCCTCTCAGAGTCTTGACACAAAATTTTCAGAACTGAAAGAACTTCAGGTCCTGTGGCCTCAGCAAACACAAGAGTGTTCAATGGGGAGTTTCTTGACCTATAGTGAGGAATCACAAAGAGACAGAGAAACACATAACATGAGCCTGAATCTGATAGCCTACAATGGCCCTCCATTTTCAGTTTCAAAAGATTGTGTGGAAGAGTCAATGCAGTTAAAGCCTGATCTCACATTGAGTGAAGATATGAAGCAGAATATGATGTTTGTTTCCTCATCAAGTGATGGTAAAGTAGTGAAGGGAGATTTTTTACAAGAAAGGCCTTCAAGCCTCTTATCCATGAATGTTGGAGTTGTAGAAGAGGAAAAATTTGGGAGAACAACTCTTTCAGAAACTGGGAGAATGGCAATTAAATTGAACAACCATGAGAAGATTTCTTCAGATTATAGACTTCCAAACTTTGAAGTGAAACTGGACCTGAATTCCCATGATGATAATGATGCTTCTTCTCACTGCCAACAATTTGATTTGAATGGTTTCAGCTGGAATTGCTAG 1203 0.4073 MYYQQQQQQQQARNMHALRMHSPTERHMMMQGGNGAGDSGLVLSTDAKPRLKWTPDLHERFIEAVNQLGGADKATPKTVLKLMGIPGLTLYHLKSHLQKYRISKNMHGQTNTGNNKIEATGRISEASGIQMKHLSIGLQTNKNSEINDALQMQIEVQRRLHEQLEQVQRHLQLRIEAQGKYLQAVLEKAQETLGRQNIGAEGVEAAKVQLSELASRVSSQSLDTKFSELKELQVLWPQQTQECSMGSFLTYSEESQRDRETHNMSLNLIAYNGPPFSVSKDCVEESMQLKPDLTLSEDMKQNMMFVSSSSDGKVVKGDFLQERPSSLLSMNVGVVEEEKFGRTTLSETGRMAIKLNNHEKISSDYRLPNFEVKLDLNSHDDNDASSHCQQFDLNGFSWNC 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g01543 400 Gene3D - 47 105 - -
Viun4g01543 400 Coils Coil 147 167 - -
Viun4g01543 400 FunFam Myb family transcription factor 47 105 - -
Viun4g01543 400 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 21 269 IPR044848 GO:0003700
Viun4g01543 400 SUPERFAMILY Homeodomain-like 47 103 IPR009057 -
Viun4g01543 400 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 45 105 IPR017930 -
Viun4g01543 400 Pfam MYB-CC type transfactor, LHEQLE motif 145 192 IPR025756 -
Viun4g01543 400 Pfam Myb-like DNA-binding domain 50 101 IPR001005 -
Viun4g01543 400 NCBIfam myb-like DNA-binding domain, SHAQKYF class 48 103 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g01543 Viun-Chr4 27776994 27780441 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun4g01543 80 399 G2-like Transcription Factor Family AT3G04030 49.394 2.26e-85 261
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Viun4g01543 Myb_DNA-binding 4.6e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g01543 - - gmx:100786282 687.182