Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g01541 ATGATGGAAGAAGCTGTTGTGGTTAACAAAGGAGATGAAGCTTTGGATTTGCCCCCAGGTTTCAGATTCCACCCCACAGATGAAGAGATCATCACTTGTTACCTCACAGAGAAAGTGTTGAATAGAGGCTTCAGTGCAACTGCCATTGGAGAAGCTGATTTGAACAAGTGTGAGCCTTGGGACTTGCCCAAGAAAGCGAAAATGGGGGAGAAAGATTGGTACTTCTTCTGCCAAAGGGATAGGAAGTATCCAACAGGGTTGAGAACAAATAGAGCAACACAATCTGGGTATTGGAAAGCCACTGGGAAAGACAAAGAGATTTTCAAAGGGAAGAACAATCTTGTGGGGATGAAGAAGACCCTTGTGTTCTATAGAGGAAGAGCTCCAAAGGGAGAGAAAACAAATTGGGTTATGCACGAATTCAGATTGGAAGGAAAATTCGCATGTTACAACGTTCCCAAGGCTGCCAAGGATGAATGGGTTGTGTGCAAGGTTTTCCATAAGAGCAACAGTGATGTTAACAAAAGGGTACTCCCAAATAACCCTGGCATTGGTCTTCTCAGAATGAACTCAATAGGAGAAGATCTATTTGATTTCTCTTCACTTCCACCTCTTGTGGATCCTCTCTTTGATCAAACCTCACACAACAAACACATTCACAATGATGATTTCAAGGGTACTACTAATAGTACTAACACTCACAACACACCTTCATCAGTTTCATCACCTAAACCACCCTATTACCTTCCCAATTTCATCGACAACAATCACCACACGATGAAGCCCGAAGAATACAGAATCTATCAGAATTTCAACAACGCTTCCACCAGCCAAGGGAATTTCAACTCTAGTAACAACCCAATGGGAATTGGCGCAAGCAATAATCATAACCCCCTTCAAAACTCAACCTTCCACATGTTCCAAGATTACTATATGCACCAAGGCAAAAACAGTTTCCAACAGTGCAAGATGGAGCAATTCTCCAACACCGTGGTCAGTGCCTCTCAAGACACGTGCCTCAGCAACGACAGAAACACTGACACTTCCTCGGTGGTGTCAAAGCAAGACAACAACAACATGGGAAGGAACAAGGCATTGTACGAGGATCTTGATCAAGCTCCTTCATCAGTTGCTACCCTCTCAGATTTGGATTGCCTCTGGGATGATTACTGA 1173 0.4348 MMEEAVVVNKGDEALDLPPGFRFHPTDEEIITCYLTEKVLNRGFSATAIGEADLNKCEPWDLPKKAKMGEKDWYFFCQRDRKYPTGLRTNRATQSGYWKATGKDKEIFKGKNNLVGMKKTLVFYRGRAPKGEKTNWVMHEFRLEGKFACYNVPKAAKDEWVVCKVFHKSNSDVNKRVLPNNPGIGLLRMNSIGEDLFDFSSLPPLVDPLFDQTSHNKHIHNDDFKGTTNSTNTHNTPSSVSSPKPPYYLPNFIDNNHHTMKPEEYRIYQNFNNASTSQGNFNSSNNPMGIGASNNHNPLQNSTFHMFQDYYMHQGKNSFQQCKMEQFSNTVVSASQDTCLSNDRNTDTSSVVSKQDNNNMGRNKALYEDLDQAPSSVATLSDLDCLWDDY 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g01541 390 Gene3D NAC domain 26 173 IPR036093 GO:0003677|GO:0006355
Viun4g01541 390 ProSiteProfiles NAC domain profile. 17 168 IPR003441 GO:0003677|GO:0006355
Viun4g01541 390 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 16 293 - -
Viun4g01541 390 MobiDBLite consensus disorder prediction 225 242 - -
Viun4g01541 390 Pfam No apical meristem (NAM) protein 18 143 IPR003441 GO:0003677|GO:0006355
Viun4g01541 390 MobiDBLite consensus disorder prediction 340 359 - -
Viun4g01541 390 SUPERFAMILY NAC domain 13 168 IPR036093 GO:0003677|GO:0006355
Viun4g01541 390 FunFam NAC domain-containing protein 100-like 26 172 - -
Viun4g01541 390 MobiDBLite consensus disorder prediction 221 246 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g01541 Viun-Chr4 27713365 27715433 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun4g01541 1 370 NAC Transcription Factor Family AT5G18270 51.697 3.53e-118 345
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Viun4g01541 NAM 1.3e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g01541 - - gmx:100813376 570.466