Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g01532 ATGGGAACCCCACAATCCAACAACTTGCCCCCAGGGTTTAGGTTCCACCCTACAGATGAAGAGCTCATTCTTCACTACCTTAGGAAAAAGGTAGCCTCCATTCCTTTGCCAGTTTCCATCATTGCTGAGGTTGATATCTACAAGTGTGATCCATGGGAGCTACCAGCTAAGGCTGCGTTTGGGGAGAAAGAGTGGTACTTTTTCAGTCCTAGAGATCGGAAGTACCCAAATGGAGCGAGACCAAACAGGGCAGCAGCTTCAGGGTATTGGAAGGCAACGGGCACTGATAAGAACATAGTTGCATCATTGGGTGGAGGAGTGAGACAACATTTTGGTGTCAAGAAGGCTTTGGTGTTCTACAAAGGAAAACCCCCAAAGGGTGTCAAAACCAATTGGATCATGCATGAATATCGCCTTGTTGACACCAATAAACCTGTTAGGGTCAAAGACGCTTCCATGAGATTGGATGACTGGGTTCTGTGCCGGATATACAAGAAGTCCAAACACAGCCTAACTTCAATCACAGAGGCATCACAAACAGTGGAAGTGAAAGAGCAAGATGAAGCGGAAGAAGAGGAGCAAATGAAAGAAACTTTTTCTTTTTCACCACCTCTTCTTCTCCCTACTCCACAAGCCACCCTCATATCTCAAAAATCTCTATCCTTCTCCAACCTCTTGGATGCAACAGACTTTTCCATGCTCAGAACCATCTTATCTGAGAACCATAACAACTCCACTAATTACCCAAACACAACCTTGTTCAATTCTGAGAATCTGGATCATGAAACCCCCCAAAACTTCTACACCAACAACACTGATATTAACAATAGTACCTGTTTCGTTCAGAAGAACCCTTCAGTGATTTCAAACATGGATGAGAACATGATGTACCCTCCAAAGAAACACCATAGTTCTTCTTATTGCAATTTTGCAAACACCACCCTCCAAAACCAGAACCCCCAGTGGAACTTCATGTTCAAGCAGCCTCACATGAATCGCCAGCTACTTCCGGGTCCCCAATATCTTCAATTTCAGTGA 1038 0.4441 MGTPQSNNLPPGFRFHPTDEELILHYLRKKVASIPLPVSIIAEVDIYKCDPWELPAKAAFGEKEWYFFSPRDRKYPNGARPNRAAASGYWKATGTDKNIVASLGGGVRQHFGVKKALVFYKGKPPKGVKTNWIMHEYRLVDTNKPVRVKDASMRLDDWVLCRIYKKSKHSLTSITEASQTVEVKEQDEAEEEEQMKETFSFSPPLLLPTPQATLISQKSLSFSNLLDATDFSMLRTILSENHNNSTNYPNTTLFNSENLDHETPQNFYTNNTDINNSTCFVQKNPSVISNMDENMMYPPKKHHSSSYCNFANTTLQNQNPQWNFMFKQPHMNRQLLPGPQYLQFQ 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g01532 345 Coils Coil 174 194 - -
Viun4g01532 345 Gene3D NAC domain 18 171 IPR036093 GO:0003677|GO:0006355
Viun4g01532 345 ProSiteProfiles NAC domain profile. 9 166 IPR003441 GO:0003677|GO:0006355
Viun4g01532 345 FunFam NAC transcription factor 56 18 171 - -
Viun4g01532 345 SUPERFAMILY NAC domain 6 166 IPR036093 GO:0003677|GO:0006355
Viun4g01532 345 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 8 265 - -
Viun4g01532 345 Pfam No apical meristem (NAM) protein 10 139 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g01532 Viun-Chr4 27447443 27449529 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun4g01532 7 265 NAC Transcription Factor Family AT3G04070 59.191 3.76e-104 308
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Viun4g01532 NAM 2.2e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g01532 - - gmx:100817074 506.523