Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g01521 ATGGTTAGTGCAGTAAAAGCAGCCATTGGAGATTTGGTGTTGACTTTCTTGTGGGTCGTCTTTTCCTCCATGTTGGGGTTGGCCACCGATGTCATAACAAAAGCGCTTGATCTTCACAATGTGTCCTACAACGGTTTTCATTACGCTGACGTTATTGTCATCACTTCGCTCATCTTTATCCTCGTTACCATCTTCACCTCCATTGCCAATGCCTTGGGCGGTGCCAGCTTCAACCCCACCGGTAATGCTTCACTCTACGCCGCCGGTGTTGGCGATGACACCCTTTTCTCAATGGCTCTCCGGTTCCCTGCTCAGGTACTGGGTTCAGTGGGTGGTGTTCTGGTTGTTATGGAGTATATGCCAGAGGAATATAGGCACTTCATTGCAGGGCCTTCTTTAAGGGTTAGCTTGCATACTGGAGCTCTAGCAGAAGGGGTGCTGACATTTGTGATCACATTTGCTGTTCTCCTCATCATGATCAAGGGTCCTCGCAGTGGCACCGCAAAGACTTTGTTGCTGGCAATCTCAACTGTGGTTTTGATCACTGTTGGTGCTAGTTACACTGGACCAGCTATGAACCCTGCCTTTGCATTTGGCTGGGCATACGTTGAGAAATGGCACGACAAATGGGACCACTTCTATGTATACTGGATCTGCCCATTCATTGGATCAATACTAGCTGCATGGCTGTTCCGTATTGTCTTTCCCCCACCACCACCAGCGGAAAAACAGAAGAAAGCCTGA 744 0.4879 MVSAVKAAIGDLVLTFLWVVFSSMLGLATDVITKALDLHNVSYNGFHYADVIVITSLIFILVTIFTSIANALGGASFNPTGNASLYAAGVGDDTLFSMALRFPAQVLGSVGGVLVVMEYMPEEYRHFIAGPSLRVSLHTGALAEGVLTFVITFAVLLIMIKGPRSGTAKTLLLAISTVVLITVGASYTGPAMNPAFAFGWAYVEKWHDKWDHFYVYWICPFIGSILAAWLFRIVFPPPPPAEKQKKA 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g01521 247 Gene3D Glycerol uptake facilitator protein. 1 244 IPR023271 -
Viun4g01521 247 PRINTS Major intrinsic protein family signature 143 161 IPR000425 GO:0015267|GO:0016020|GO:0055085
Viun4g01521 247 PRINTS Major intrinsic protein family signature 6 25 IPR000425 GO:0015267|GO:0016020|GO:0055085
Viun4g01521 247 PRINTS Major intrinsic protein family signature 174 196 IPR000425 GO:0015267|GO:0016020|GO:0055085
Viun4g01521 247 PRINTS Major intrinsic protein family signature 97 116 IPR000425 GO:0015267|GO:0016020|GO:0055085
Viun4g01521 247 PRINTS Major intrinsic protein family signature 214 234 IPR000425 GO:0015267|GO:0016020|GO:0055085
Viun4g01521 247 PRINTS Major intrinsic protein family signature 58 82 IPR000425 GO:0015267|GO:0016020|GO:0055085
Viun4g01521 247 Pfam Major intrinsic protein 2 231 IPR000425 GO:0015267|GO:0016020|GO:0055085
Viun4g01521 247 PANTHER AQUAPORIN SIP1-1 4 247 IPR044222 GO:0015250
Viun4g01521 247 FunFam Aquaporin SIP1-1 2 247 - -
Viun4g01521 247 SUPERFAMILY Aquaporin-like 3 241 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g01521 Viun-Chr4 27288348 27293702 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun4g01521 2 246 Major Intrinsic Protein MIP AT5G18290 52.033 9.78e-85 251
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g01521 K09875 - gmx:100788738 384.415