Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g01504 ATGGTTGATGAATGTTTTTATGTTAGTGATGCTGATAACAAATCAGGGGCAGAATCTATGGCTAGTGACCTTAGAACGAAACTTGACATTCATGTGAAGGGTGATGTAGAGGCACCGGTTTTGTCATTCTCTGCCTGTAACCTCCCTGATAAGCTACTCCACAATATAGAAGCAGCAGGGTATGACATGCCTACACCTGTCCAGATGCAAGCAATCCCTGCTGCTTTGACGGGCAAAAACATGCTTGTTTTGGCCAATACTGGATCTGGGAAATCTGCTTCGTTTCTTATTCCTATAGTTTCTCGCTGCGTGATTCATTGCCGGCAATATGTTTCAGATAAGAAGAAGCCTTTGGCTATGGTGTTAACACCCACCAGAGAGCTCTGTATACAGGTTGAAGAGCATGCTAAGATGCTTGGCAAGGGATTGCCTTTCAAAACAGCACTTGTGGTTGGTGGTGAGGCCATGGCTGGACAACTCTATCGCATTCAACAAGGGGTGGAATTGATTGTAGGAACCCCAGGAAGACTTGTTGATCTTCTAAGTAAGCATGAGATTGAGTTAGATGATGTGATGACTTTTGTTGTGGATGAGGTGGACTGTATGCTGCAAAGGGGTTTTAGAGATCAGGTCATGCAGATATACAGTGCTCTGTCACAACCCCAGGTCTTGATGTATTCTGCAACAATGTCTAATGATTTAGAGAAGATGATTAACACTTTGGCGAAAGGTACAGTGGTTATCTCTGTTGGAGAACCTAATAGTGCAAATAAGGCTGTGAAGCAGGTAGCTATTTGGGTTGAGTCAAAGCAAAAGAAGCAGAAGTTGTTTGACATTTTGACAAGTGTGAAGCATTTTAAGCCACCTGTTGTAGTATATGTAGGATCCAGACTTGGAGCAGATCTTCTGGCTAATGCTATTACAGTTGCCACAGGAATTAAAGCAGTTTCAATTCATGGGGAGAAGTCTATGAAGGAAAGGAGAGAAATAATGCAGTCCTTTTTCATGGGTGAGGTCCCAGTGGTTGTGGCTACTGGAGTTTTAGGCAGAGGGGTAGATCTGCTGGGTGTAAGACAGGTTATTGTATTTGACATGCCTAATTCCATTAAGGAATATGTACATCAGATTGGAAGAGCATCTAGAATGGGAGAGGAAGGTGAAGGTATAGTTTTTGTGAATGAGGAAAATAAGAATGTTTTTGCTGACTTAATTGATGTTCTGAAATCTGGTGGAGCAGCTGTGCCTCGGGAGCTTGCCAATTCACGGTACGCCACAGGGTTTTTCTATGGTGGGAAGGCTTCGAAAAAGAGAAAGAACACAGGATAA 1326 0.4299 MVDECFYVSDADNKSGAESMASDLRTKLDIHVKGDVEAPVLSFSACNLPDKLLHNIEAAGYDMPTPVQMQAIPAALTGKNMLVLANTGSGKSASFLIPIVSRCVIHCRQYVSDKKKPLAMVLTPTRELCIQVEEHAKMLGKGLPFKTALVVGGEAMAGQLYRIQQGVELIVGTPGRLVDLLSKHEIELDDVMTFVVDEVDCMLQRGFRDQVMQIYSALSQPQVLMYSATMSNDLEKMINTLAKGTVVISVGEPNSANKAVKQVAIWVESKQKKQKLFDILTSVKHFKPPVVVYVGSRLGADLLANAITVATGIKAVSIHGEKSMKERREIMQSFFMGEVPVVVATGVLGRGVDLLGVRQVIVFDMPNSIKEYVHQIGRASRMGEEGEGIVFVNEENKNVFADLIDVLKSGGAAVPRELANSRYATGFFYGGKASKKRKNTG 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g01504 441 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 275 422 IPR001650 -
Viun4g01504 441 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 72 248 IPR014001 -
Viun4g01504 441 Gene3D - 7 252 IPR027417 -
Viun4g01504 441 SMART ultradead3 60 263 IPR014001 -
Viun4g01504 441 SMART helicmild6 301 383 IPR001650 -
Viun4g01504 441 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 41 69 IPR014014 GO:0003724
Viun4g01504 441 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 188 397 IPR027417 -
Viun4g01504 441 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 36 406 - -
Viun4g01504 441 Gene3D - 254 439 IPR027417 -
Viun4g01504 441 CDD SF2_C_DEAD 260 392 - -
Viun4g01504 441 Pfam DEAD/DEAH box helicase 65 236 IPR011545 GO:0003676|GO:0005524
Viun4g01504 441 Pfam Helicase conserved C-terminal domain 276 383 IPR001650 -
Viun4g01504 441 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 31 250 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g01504 Viun-Chr4 26576311 26578812 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun4g01504 42 403 Eukaryotic Initiation Factors Gene Family AT1G72730 31.880 2.07e-54 185
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g01504 K19466 - gmx:100781473 769.615