Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g01503 ATGACTGATTCTCACGTAAATCACAACGACCCATCTCTCGCTACCGATTATGATGCACCAGAGGATGCTGGGGAAGATGTGAAGCTGAGGTCTAGGGACCAAAGACTGGCTCTGCAAGGTGAGCCAAAGTGTGTTATATGTGGCCGCTACGGTGAATACATATGTGATGAAACTGATGATGATGTTTGCAGTTTGGAATGCAAACAAGCAGTGCTTGGAAGAATTGCGAAAGCATTGGCTCCTTATGGAAATCTTCTGCCACCTAAAAAGATTCCTATGGTTGATGAATGTTTTTATGTTAGTGATGCTGATAACAAATCAGGGGCAGAATCTATGGCTAGTGACCTTAGAACGAAACTTGACATTCATGTGAAGGGTGATGTAGAGGCACCGGTTTTGTCATTCTCTGCCTGTAACCTCCCTGATAAGCTACTCCACAATATAGAAGCAGCAGGGTATGACATGCCTACACCTGTCCAGATGCAAGCAATCCCTGCTGCTTTGACGGGCAAAAACATGCTTGTTTTGGCCAATACTGGATCTGGGAAATCTGCTTCGTTTCTTATTCCTATAGTTTCTCGCTGCGTGATTCATTGCCGGCAATATGTTTCAGATAAGAAGAAGCCTTTGGCTATGGTGTTAACACCCACCAGAGAGCTCTGTATACAGGTTGAAGAGCATGCTAAGATGCTTGGCAAGGGATTGCCTTTCAAAACAGCACTTGTGGTTGGTGGTGAGGCCATGGCTGGACAACTCTATCGCATTCAACAAGGGGTGGAATTGATTGTAGGAACCCCAGGAAGACTTGTTGATCTTCTAAGTAAGCATGAGATTGAGTTAGATGATGTGATGACTTTTGTTGTGGATGAGGTGGACTGTATGCTGCAAAGGGGTTTTAGAGATCAGGTCATGCAGATATACAGTGCTCTGTCACAACCCCAGGTCTTGATGTATTCTGCAACAATGTCTAATGATTTAGAGAAGATGATTAACACTTTGGCGAAAGGTACAGTGGTTATCTCTGTTGGAGAACCTAATAGTGCAAATAAGGCTGTGAAGCAGGTAGCTATTTGGGTTGAGTCAAAGCAAAAGAAGCAGAAGTTGTTTGACATTTTGACAAGTGTGAAGCATTTTAAGCCACCTGTTGTAGTATATGTAGGATCCAGACTTGGAGCAGATCTTCTGGCTAATGCTATTACAGTTGCCACAGGAATTAAAGCAGTTTCAATTCATGGGGAGAAGTCTATGAAGGAAAGGAGAGAAATAATGCAGTCCTTTTTCATGGGTGAGGTCCCAGTGGTTGTGGCTACTGGAGTTTTAGGCAGAGGGGTAGATCTGCTGGGTGTAAGACAGGTTATTGTATTTGACATGCCTAATTCCATTAAGGAATATGTACATCAGATTGGAAGAGCATCTAGAATGGGAGAGGAAGGTGAAGGTATAGTTTTTGTGAATGAGGAAAATAAGAATGTTTTTGCTGACTTAATTGATGTTCTGAAATCTGGTGGAGCAGCTGTGCCTCGGGAGCTTGCCAATTCACGGTACGCCACAGGGTTTTTCTATGGTGGGAAGGCTTCGAAAAAGAGAAAGAACACAGGATAA 1602 0.4338 MTDSHVNHNDPSLATDYDAPEDAGEDVKLRSRDQRLALQGEPKCVICGRYGEYICDETDDDVCSLECKQAVLGRIAKALAPYGNLLPPKKIPMVDECFYVSDADNKSGAESMASDLRTKLDIHVKGDVEAPVLSFSACNLPDKLLHNIEAAGYDMPTPVQMQAIPAALTGKNMLVLANTGSGKSASFLIPIVSRCVIHCRQYVSDKKKPLAMVLTPTRELCIQVEEHAKMLGKGLPFKTALVVGGEAMAGQLYRIQQGVELIVGTPGRLVDLLSKHEIELDDVMTFVVDEVDCMLQRGFRDQVMQIYSALSQPQVLMYSATMSNDLEKMINTLAKGTVVISVGEPNSANKAVKQVAIWVESKQKKQKLFDILTSVKHFKPPVVVYVGSRLGADLLANAITVATGIKAVSIHGEKSMKERREIMQSFFMGEVPVVVATGVLGRGVDLLGVRQVIVFDMPNSIKEYVHQIGRASRMGEEGEGIVFVNEENKNVFADLIDVLKSGGAAVPRELANSRYATGFFYGGKASKKRKNTG 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g01503 533 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 164 340 IPR014001 -
Viun4g01503 533 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 367 514 IPR001650 -
Viun4g01503 533 Pfam Helicase conserved C-terminal domain 368 475 IPR001650 -
Viun4g01503 533 CDD SF2_C_DEAD 352 484 - -
Viun4g01503 533 Gene3D - 99 340 IPR027417 -
Viun4g01503 533 Pfam HIT zinc finger 42 68 IPR007529 -
Viun4g01503 533 Gene3D - 24 79 - -
Viun4g01503 533 Gene3D - 341 516 IPR027417 -
Viun4g01503 533 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 133 161 IPR014014 GO:0003724
Viun4g01503 533 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 280 489 IPR027417 -
Viun4g01503 533 SMART ultradead3 152 355 IPR014001 -
Viun4g01503 533 FunFam DEAD-box ATP-dependent RNA helicase 41 24 81 - -
Viun4g01503 533 SMART helicmild6 393 475 IPR001650 -
Viun4g01503 533 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 112 512 - -
Viun4g01503 533 MobiDBLite consensus disorder prediction 1 25 - -
Viun4g01503 533 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 123 342 IPR027417 -
Viun4g01503 533 Pfam DEAD/DEAH box helicase 157 328 IPR011545 GO:0003676|GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g01503 Viun-Chr4 26576311 26578812 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun4g01503 134 495 Eukaryotic Initiation Factors Gene Family AT1G72730 31.880 2.35e-53 184
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g01503 K19466 - gmx:100781473 915.22