Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g01479 ATGAGTTCCTGCAAGTCATCGCCATCGTCCTCCAAGACCAAAAAGAAGCAAACCGCAACACAAGATCATCAACAACATGAAACGGTTTGGGGAGGGAGGTATCTTGGTGTGAGGAGGAGGCCGTGGGGAAGGTATGCCGCGGAAATTCGTGACCCTTCCACCAAGGAAAGACATTGGTTGGGCACATTTGATACCGCAGAAGAGGCCGCTCTGACTTACGACAGAGCGGCCCGCTCCATGCGTGGATCACGTGCCCGAACCAATTTTGTGTACCCGGATACGCCACCGGGTTCCTCCGTCACCACCATCCTCTCCCCTGATGAACAAACTCAAACCCAAATTCAAATCCATCAGGTGCAAGAAGACCTCTCGTCTATACTGAACCCGAACCTGTTTTCACAACCTGACCCAAACCCGCAATTTTCCTTGGGCGGGTACTCGGGTGTAACGAACACTCCCACACTTTCTACCAACGAAGTTGTTTCGTGCGGTGGCTATAGCTATAGTTATGGTTACACTGAGGGAGGAAGCAACGTGGAGGATTCACATTCACATTCTCATTCTCATTTTAATCTCTTTGATGATGGTGAAACGCAGCTTCCACCGTTGCCACCGGATATCACAAGCTCCATGGCCTACGAAACGGGGAATGGGTTTTATGGAGACGGCGTCGGGTTTTCGGATCCGAGTTTTAGTATGACTGATACCGGATCGGGTTACCCGTTTTCTGGGTTCGAATCGGGTGATTACGTGGTGCATAGTCCACTTTTTAGTGCAATGCCACCGGTGTCCGATAATGTGGCAATGGGTCACGAAGGTTTTGATTTGGGAAGCTCTTCTTATTTCTTCCGAAATTAG 858 0.5 MSSCKSSPSSSKTKKKQTATQDHQQHETVWGGRYLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAEEAALTYDRAARSMRGSRARTNFVYPDTPPGSSVTTILSPDEQTQTQIQIHQVQEDLSSILNPNLFSQPDPNPQFSLGGYSGVTNTPTLSTNEVVSCGGYSYSYGYTEGGSNVEDSHSHSHSHFNLFDDGETQLPPLPPDITSSMAYETGNGFYGDGVGFSDPSFSMTDTGSGYPFSGFESGDYVVHSPLFSAMPPVSDNVAMGHEGFDLGSSSYFFRN 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g01479 285 Gene3D AP2/ERF domain 32 91 IPR036955 GO:0003700|GO:0006355
Viun4g01479 285 MobiDBLite consensus disorder prediction 1 15 - -
Viun4g01479 285 FunFam Ethylene-responsive transcription factor 2 33 91 - -
Viun4g01479 285 Pfam AP2 domain 34 82 IPR001471 GO:0003700|GO:0006355
Viun4g01479 285 CDD AP2 33 89 IPR001471 GO:0003700|GO:0006355
Viun4g01479 285 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 15 120 - -
Viun4g01479 285 MobiDBLite consensus disorder prediction 1 32 - -
Viun4g01479 285 PRINTS Ethylene responsive element binding protein signature 34 45 IPR001471 GO:0003700|GO:0006355
Viun4g01479 285 PRINTS Ethylene responsive element binding protein signature 56 72 IPR001471 GO:0003700|GO:0006355
Viun4g01479 285 SMART rav1_2 33 96 IPR001471 GO:0003700|GO:0006355
Viun4g01479 285 ProSiteProfiles AP2/ERF domain profile. 33 90 IPR001471 GO:0003700|GO:0006355
Viun4g01479 285 SUPERFAMILY DNA-binding domain 33 90 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g01479 Viun-Chr4 25711005 25712258 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun4g01479 9 274 AP2-EREBP Transcription Factor Family AT5G13910 45.522 9.32e-52 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Viun4g01479 AP2 1.5e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g01479 K09286 - gmx:100815668 417.157