Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g01448 ATGACTACCAACCATCAAAACACCACCTTCTTCCCCATCCCACATGGTCAAATAACCACTTCTAAATTTATCAATACCCAAGATCCATCTCAAGCTACAAATCAAGGTAATGCTGATATTAGGAAAAAGCACTATAGAGGAGTGAGGCAAAGACCTTGGGGAAAATGGGCAGCTGAAATAAGAGACCCTAAGAAAGCAGCAAGAGTGTGGCTTGGCACCTTTGACACAGCAGAAGCTGCAGCTATGGCTTATGATGTTGCTGCATTGAAGTTCAAAGGAAGCAAAGCCAAGCTCAATTTTCCTGAACGTGTTGCTGTGCCACCATCACCACTACCACCGGCAACCACCACCACCACTTCTTCAGCTTCTGCACAACCCTCTTCCTTCACACCACCACCACCTCCACCACACGTTGGTGGCGATCATCAAACTTCACAAACATCAGAAGAAGCAGAAGGGTTTCCGGGTCTGATGGAGTATGCACGGTTGCTGAAATGTAGGGATGATGATGATTTTCAACGTGTTGCATTGGGGCTTTACCAGCACCATCCTAGTGAGGATGTTATTTACGGTTCTTCTCAGTCACCACCTGTGCCATTTTTTCTGTCTTCTTCATCTTCTTCTGCATTTCCATCTTCAACTTCTCAGGGTGATTATGGTTCTTCTGGATTCTATAGTCATGGAGGGAGTGGTTTTGATGAAGGGAACAAGAGAGGATCATAG 723 0.455 MTTNHQNTTFFPIPHGQITTSKFINTQDPSQATNQGNADIRKKHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFDTAEAAAMAYDVAALKFKGSKAKLNFPERVAVPPSPLPPATTTTTSSASAQPSSFTPPPPPPHVGGDHQTSQTSEEAEGFPGLMEYARLLKCRDDDDFQRVALGLYQHHPSEDVIYGSSQSPPVPFFLSSSSSSAFPSSTSQGDYGSSGFYSHGGSGFDEGNKRGS 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g01448 240 PRINTS Ethylene responsive element binding protein signature 45 56 IPR001471 GO:0003700|GO:0006355
Viun4g01448 240 PRINTS Ethylene responsive element binding protein signature 67 83 IPR001471 GO:0003700|GO:0006355
Viun4g01448 240 MobiDBLite consensus disorder prediction 201 223 - -
Viun4g01448 240 FunFam Ethylene-responsive transcription factor 2 43 102 - -
Viun4g01448 240 Pfam AP2 domain 44 93 IPR001471 GO:0003700|GO:0006355
Viun4g01448 240 ProSiteProfiles AP2/ERF domain profile. 44 101 IPR001471 GO:0003700|GO:0006355
Viun4g01448 240 SUPERFAMILY DNA-binding domain 44 102 IPR016177 GO:0003677
Viun4g01448 240 SMART rav1_2 44 107 IPR001471 GO:0003700|GO:0006355
Viun4g01448 240 MobiDBLite consensus disorder prediction 201 240 - -
Viun4g01448 240 Gene3D AP2/ERF domain 43 103 IPR036955 GO:0003700|GO:0006355
Viun4g01448 240 PANTHER DNA-BINDING DOMAIN 31 149 IPR044808 GO:0003700|GO:0009873
Viun4g01448 240 MobiDBLite consensus disorder prediction 103 152 - -
Viun4g01448 240 CDD AP2 43 102 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g01448 Viun-Chr4 25137611 25139727 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun4g01448 25 106 AP2-EREBP Transcription Factor Family AT5G61890 77.647 2.81e-42 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Viun4g01448 AP2 5.5e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g01448 - - gmx:100806383 269.24