Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g01400 ATGGAGGAAATGAAGGAGAAGAATTGGAGAATGGAAGCGGAGGAGAATTTGCAGAGGCTGCAATCTCTTCTGTTGGGCGCGGAACACGCTCTAGCAAGAGAGGACTTCGCCTCCGCTCACGTCCTCGCGCTTCGTCTTCTCGGCTTCCTCGACGTGAAATCCTACTCTGACGCCGTCGATGAGGCCTTCCTTCAACCGACTCGACGCGACGCACTCTCCAAGCTTCACACCGCTCGCAAATCCCTCACCCCTCTATCTGATCGGCAAGCTTTTGAGCAAGCAAAGAAATCTCCAGGATACATTTTTGGCACAACAGGAGATATTGACATTGAGAAGATTCAGAGTTCAAAGTACTTCCGTGCTCTTGTCAACCAATCTAAAGAAAAAGACGCGTATAAATTGATTGATCACCTGGGAAAACAGGACAAAACGGGCAGCAAAGCCTCGAAGCAAATGGTGCAAACGAAGCTACCATCCATGTATGGGAAAAGCAGCTTGTGGACTAGCAACTGTTCCCAGAGTTCTTTGAACATGAAAAATTACAGTTCCGAGGATTGCAGGATTCTTGGTAGGCCTCAATCTCAAGCCAGCCATACAAAGGGTCTTGGTGTCTCTTCTATCTTTCAAGTTGAAGGAGAAGAAAGAGCTTTTGGAAACACATTCTCCACCAAACGTGTACACGTGGAAGCTAATAGCCCCAGAGTTGGATACTTGAAGTCACCTTCAAATAAGGACGAAGTTCACCCTGATGTCTGTGGCAAAGGGTTTATTACCGCTAGAGCAAAACTGGAAATTGAAGAAAAGCAGAAGCGAGGAGCAGGTGGTTCACCCTGTACCTCTGTCTCACCGCAGTGTGATAACAATCCTGCCAACAGGTTGCATGGTGGGAGATCATATGGTGTTTCACGACGTGGTTTCCGTGGTAACTTCGTTCCCCCTATAAAATCCAATGGGAACAATGCTGGAAATATGAGCGCACGAAATGCTGGAAAATGTGATGATTCTTTAGATGACTCTACAAGGAAATGTTTGGAAATCCTGTGTGGTCCTGATGGCGAGCTTCCAGAGAAATTGAGGAATTTGGAACCTCGCCTCATTGAACATGTTAGTAACGAGATCATGGATAAAGATCCCAATGTCCGGTGGGATGATATTGCTGGATTGGAGCATGCCAAGAAATGTATTGATGAGATGGTAATATATCCTTTGCAACGTCCTGACATATTCATGGGCTGTCGTTCACCTGGGAGGGGTCTTCTTTTGTTTGGTCCACCAGGAACTGGTAAAACAATGATAGGAAAAGCCATAGCAGGGGAGGCGAAAGCAACCTTCTTTTACATATCTGCAAGTTCGTTGACTAGCAAGTGGATCGGTGAAGGTGAAAAGCTAGTGAGAGCCCTTTTTGGAGTTGCCAGTTGCCGTCAGCCTGCTGTAATTTTTGTTGATGAAATAGATTCTCTCCTGTCTCAGCGTAAATCAGACGGTGAGCATGAATCCAGTAGACGGCTAAAGACACAGTTTCTCATTGAAATGGAAGGCTTCGACAGTGGTAGCGAGCAAATTCTGCTTATAGGGGCAACGAATCGTCCCCAGGAGCTTGATGAAGCAGCACGAAGGAGACTTACTAAAAGACTTTATATTCCCCTACCATCCTCAGAGGCAAGAGCTTGGATTGTACGTAACCTTCTACAGAAAGATGGACTATTCAATCTTTCAAACGAGGAAATGGATATCATATGCAACTTAACGGAAGGTTATTCAGGATCAGACATGAAAAACTTGGTGAAGGATGCTTCTATGGGACCCCTAAGAGAGGCTTTAAGACAAGGCATAGAAATTACAAAGTTGAAAAAGGAGGATATGCGAACTGTAACTCTTCAGGACTTCGAGTACTCCCTCAGAGAGGTGAGGCCTTCTGTTTCCCCAAATGAACTTGGCACGTATGATCAATGGAACAAGCAATTCGGAAGCTTATCATTGTAG 1983 0.4554 MEEMKEKNWRMEAEENLQRLQSLLLGAEHALAREDFASAHVLALRLLGFLDVKSYSDAVDEAFLQPTRRDALSKLHTARKSLTPLSDRQAFEQAKKSPGYIFGTTGDIDIEKIQSSKYFRALVNQSKEKDAYKLIDHLGKQDKTGSKASKQMVQTKLPSMYGKSSLWTSNCSQSSLNMKNYSSEDCRILGRPQSQASHTKGLGVSSIFQVEGEERAFGNTFSTKRVHVEANSPRVGYLKSPSNKDEVHPDVCGKGFITARAKLEIEEKQKRGAGGSPCTSVSPQCDNNPANRLHGGRSYGVSRRGFRGNFVPPIKSNGNNAGNMSARNAGKCDDSLDDSTRKCLEILCGPDGELPEKLRNLEPRLIEHVSNEIMDKDPNVRWDDIAGLEHAKKCIDEMVIYPLQRPDIFMGCRSPGRGLLLFGPPGTGKTMIGKAIAGEAKATFFYISASSLTSKWIGEGEKLVRALFGVASCRQPAVIFVDEIDSLLSQRKSDGEHESSRRLKTQFLIEMEGFDSGSEQILLIGATNRPQELDEAARRRLTKRLYIPLPSSEARAWIVRNLLQKDGLFNLSNEEMDIICNLTEGYSGSDMKNLVKDASMGPLREALRQGIEITKLKKEDMRTVTLQDFEYSLREVRPSVSPNELGTYDQWNKQFGSLSL 660
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g01400 660 MobiDBLite consensus disorder prediction 268 291 - -
Viun4g01400 660 PANTHER AAA DOMAIN-CONTAINING 224 657 - -
Viun4g01400 660 FunFam Fidgetin like 1 550 636 - -
Viun4g01400 660 SMART AAA_5 415 551 IPR003593 GO:0016887
Viun4g01400 660 Gene3D - 550 636 - -
Viun4g01400 660 FunFam Fidgetin-like 1 378 560 - -
Viun4g01400 660 Pfam AAA+ lid domain 582 630 IPR041569 -
Viun4g01400 660 Pfam ATPase family associated with various cellular activities (AAA) 419 549 IPR003959 GO:0005524|GO:0016887
Viun4g01400 660 MobiDBLite consensus disorder prediction 275 291 - -
Viun4g01400 660 ProSitePatterns AAA-protein family signature. 521 540 IPR003960 GO:0005524|GO:0016887
Viun4g01400 660 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 378 655 IPR027417 -
Viun4g01400 660 Coils Coil 10 30 - -
Viun4g01400 660 Gene3D - 378 652 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g01400 Viun-Chr4 23552829 23561790 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun4g01400 356 658 Calmodulin-binding Proteins AT3G56690 31.169 2.34e-40 157
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g01400 K22766 - gmx:100789161 1120.53