Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g01371 ATGTTTACTGCTGTTGGAACAGAGAGGGAGCTAGAGAAAGCTGGTAAGAAAACCAAAATGAATGTCATCCTTATTGAAGCTGATGGTTTGCAACTGGAGTGTACTTTATTTGGTCAATATGTTGATATGTTAAATGCATTTCTGGCCTCTGGAGAGGATCAACATGTTGTCATTGCTTTGCATTATTGCAAAGTGAAGACCTTCCAAGATAAAGTTTCTATTCAAAACTGTATGAACTGTACCAAGATTATCTTTAATTGTGATGGTGAAGATGCAACCAAGTTGAAAAAAATGATGTGGGATAATACTGAATCTCCTTCTCAAGCTCTTACCCAACTTTCTGCTTCTTCTAAAGTTAGCTTAGAAGATGATTTCATTAAGCTGCATCCTAGGAGTTCAATTGAAGGTCTAAAAGATTTTAAACAGGAAAGTACTTTTGTAGTAAAAGCTACTATCAAACATGTGCTAGATCATGATGATTGGTGGTATACAGCATGTATCTGCAACAAAGCAGTTTATCCTGATTCCAAAATGTTTTTTTGTGAAAAGTGTAACAAGCATGTCATTAAGGTTACACCTAGGTTTAAACTGAAACTTCGTGTAATTGATGCTACGGATTCTACAACTTTTGTTGTATTTGATCGTGATGCAAGTGCAATGTTGAAGAAATCATGCTCTGACATTCTTGAATTGCAAGACAAGAACACTGCTGCTGGAGACTTGCCTAAAGAGTTTGAAGTCCTAATTGATAAGACCTATCTCTTCAAAGTTGAGTGCAAGAATGATTATAATACCAAATTTGAACAATCATTCAGAGTTAAAAAAGTTTGCATGGATGAAAAAGTAATTGAAAGCTTTTCTGATGTTGAAATTAAGTCTTTGGATCTATACTCTGCAAATGAAGAAGAAACCAAATTAAATGAGCCAACAAATCAACTCTCACCTGATTCCATTGCAGAGGATTTGTTGATCAAATTCACAGAAGAATCAAATGATCTTGAGACTCTAAGTGATCATTTGAACAATATAGTATCAAGCCATGTTCCTCCCGAAGAATCCTTGAAAAATAAAAATGTAATTGATGTTCAAATTCATGAGTTAACCCGCAAAGAATCATCTCATCTGGACAATCTTGATTTGGGTACTCAACCACCTGTTCCAATACTTAAAAGACAAAGTCGATCTATGGTTCAAGAAAACAAGAAGATTCCAGTGAAGATGTTGAAGAAGAATATAAAGATTGAAAAGTGA 1251 0.3461 MFTAVGTERELEKAGKKTKMNVILIEADGLQLECTLFGQYVDMLNAFLASGEDQHVVIALHYCKVKTFQDKVSIQNCMNCTKIIFNCDGEDATKLKKMMWDNTESPSQALTQLSASSKVSLEDDFIKLHPRSSIEGLKDFKQESTFVVKATIKHVLDHDDWWYTACICNKAVYPDSKMFFCEKCNKHVIKVTPRFKLKLRVIDATDSTTFVVFDRDASAMLKKSCSDILELQDKNTAAGDLPKEFEVLIDKTYLFKVECKNDYNTKFEQSFRVKKVCMDEKVIESFSDVEIKSLDLYSANEEETKLNEPTNQLSPDSIAEDLLIKFTEESNDLETLSDHLNNIVSSHVPPEESLKNKNVIDVQIHELTRKESSHLDNLDLGTQPPVPILKRQSRSMVQENKKIPVKMLKKNIKIEK 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g01371 416 Gene3D - 126 286 IPR012340 -
Viun4g01371 416 CDD RPA1_DBD_C 146 276 IPR047192 -
Viun4g01371 416 Gene3D - 1 108 IPR012340 -
Viun4g01371 416 Pfam Replication factor-A C terminal domain 146 277 IPR013955 -
Viun4g01371 416 PANTHER OS03G0429900 PROTEIN 48 277 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Viun4g01371 416 SUPERFAMILY Nucleic acid-binding proteins 135 276 IPR012340 -
Viun4g01371 416 SUPERFAMILY Nucleic acid-binding proteins 9 100 IPR012340 -
Viun4g01371 416 CDD RPA1_DBD_B_like 1 91 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g01371 Viun-Chr4 22335225 22338452 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun4g01371 53 276 Core DNA Replication Machinery Family AT5G08020 24.255 1.15e-11 64.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g01371 - - vun:114180582 711.064